- removed write buffer from kelondroCache (was never used because buggy; will now be replaced by new EcoBuffer)
- added new data structure 'eco' for an index file that should use only 50% of write-IO compared to kelondroFlex The new eco index is not used yet, but already successfully tested with the collectionIndex The main purpose is to replace the kelondroFlex at every point when enough RAM is available. Othervise, the kelondroFlex stays as option in case of low memory (which then can even use a file-index) git-svn-id: https://svn.berlios.de/svnroot/repos/yacy/trunk@4337 6c8d7289-2bf4-0310-a012-ef5d649a1542pull/1/head
orbiter
17 years ago
parent
dbdec0f4d3
commit
dc26d6262b
@ -0,0 +1,149 @@
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// kelondroBufferedEcoFS.java
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// (C) 2008 by Michael Peter Christen; mc@yacy.net, Frankfurt a. M., Germany
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// first published 14.01.2008 on http://yacy.net
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//
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// $LastChangedDate: 2006-04-02 22:40:07 +0200 (So, 02 Apr 2006) $
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// $LastChangedRevision: 1986 $
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// $LastChangedBy: orbiter $
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//
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// LICENSE
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//
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// This program is free software; you can redistribute it and/or modify
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// it under the terms of the GNU General Public License as published by
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// the Free Software Foundation; either version 2 of the License, or
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// (at your option) any later version.
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//
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// This program is distributed in the hope that it will be useful,
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// but WITHOUT ANY WARRANTY; without even the implied warranty of
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// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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// GNU General Public License for more details.
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//
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// You should have received a copy of the GNU General Public License
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// along with this program; if not, write to the Free Software
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// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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package de.anomic.kelondro;
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import java.io.File;
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import java.io.IOException;
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import java.util.Iterator;
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import java.util.Map;
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import java.util.TreeMap;
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public class kelondroBufferedEcoFS {
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private kelondroEcoFS efs;
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private int maxEntries;
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private TreeMap<Integer, byte[]> buffer;
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/*
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* The kelondroBufferedEcoFS extends the IO reduction to EcoFS by providing a
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* write buffer to elements that are inside the filed entries of the file
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* That means, each time, an entry is written to the end of the file, it is not buffered
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*/
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public kelondroBufferedEcoFS(kelondroEcoFS efs, int maxEntries) throws IOException {
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this.efs = efs;
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this.maxEntries = maxEntries;
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this.buffer = new TreeMap<Integer, byte[]>();
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}
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private void flushBuffer() throws IOException {
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Iterator<Map.Entry<Integer, byte[]>> i = buffer.entrySet().iterator();
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Map.Entry<Integer, byte[]> entry;
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while (i.hasNext()) {
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entry = i.next();
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efs.put(entry.getKey().intValue(), entry.getValue(), 0);
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}
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buffer.clear();
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}
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public synchronized int size() throws IOException {
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return efs.size();
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}
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public File filename() {
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return efs.filename();
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}
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public synchronized void close() {
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try {
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flushBuffer();
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} catch (IOException e) {
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e.printStackTrace();
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}
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efs.close();
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efs = null;
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}
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public synchronized void finalize() {
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if (this.efs != null) this.close();
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}
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public synchronized void get(int index, byte[] b, int start) throws IOException {
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assert b.length - start >= efs.recordsize;
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if (index >= size()) throw new IndexOutOfBoundsException("kelondroBufferedEcoFS.get(" + index + ") outside bounds (" + this.size() + ")");
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byte[] bb = buffer.get(new Integer(index));
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if (bb == null) {
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efs.get(index, b, start);
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} else {
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System.arraycopy(bb, 0, b, start, efs.recordsize);
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}
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}
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public synchronized void put(int index, byte[] b, int start) throws IOException {
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assert b.length - start >= efs.recordsize;
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if (index > size()) throw new IndexOutOfBoundsException("kelondroEcoFS.put(" + index + ") outside bounds (" + this.size() + ")");
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if (index == efs.size()) {
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efs.put(index, b, start);
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} else {
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byte[] bb = new byte[efs.recordsize];
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System.arraycopy(b, start, bb, 0, efs.recordsize);
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buffer.put(new Integer(index), bb);
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if (buffer.size() > this.maxEntries) flushBuffer();
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}
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}
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public synchronized void add(byte[] b, int start) throws IOException {
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put(size(), b, start);
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}
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public synchronized void clean(int index, byte[] b, int start) throws IOException {
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assert b.length - start >= efs.recordsize;
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if (index >= size()) throw new IndexOutOfBoundsException("kelondroBufferedEcoFS.clean(" + index + ") outside bounds (" + this.size() + ")");
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byte[] bb = buffer.get(new Integer(index));
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if (bb == null) {
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efs.clean(index, b, start);
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} else {
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System.arraycopy(bb, 0, b, start, efs.recordsize);
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buffer.remove(new Integer(index));
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efs.clean(index);
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}
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}
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public synchronized void clean(int index) throws IOException {
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if (index >= size()) throw new IndexOutOfBoundsException("kelondroBufferedEcoFS.clean(" + index + ") outside bounds (" + this.size() + ")");
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buffer.remove(new Integer(index));
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efs.clean(index);
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}
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public synchronized void cleanLast(byte[] b, int start) throws IOException {
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assert b.length - start >= efs.recordsize;
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Integer i = new Integer(size() - 1);
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byte[] bb = buffer.get(i);
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if (bb == null) {
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efs.clean(i.intValue(), b, start);
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} else {
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System.arraycopy(bb, 0, b, start, efs.recordsize);
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buffer.remove(i);
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efs.clean(i.intValue());
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}
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}
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public synchronized void cleanLast() throws IOException {
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Integer i = new Integer(size() - 1);
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buffer.remove(i);
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efs.clean(i.intValue());
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}
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}
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@ -0,0 +1,495 @@
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// kelondroEcoFS.java
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// (C) 2008 by Michael Peter Christen; mc@yacy.net, Frankfurt a. M., Germany
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// first published 14.01.2008 on http://yacy.net
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//
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// $LastChangedDate: 2006-04-02 22:40:07 +0200 (So, 02 Apr 2006) $
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// $LastChangedRevision: 1986 $
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// $LastChangedBy: orbiter $
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//
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// LICENSE
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//
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// This program is free software; you can redistribute it and/or modify
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// it under the terms of the GNU General Public License as published by
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// the Free Software Foundation; either version 2 of the License, or
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// (at your option) any later version.
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//
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// This program is distributed in the hope that it will be useful,
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// but WITHOUT ANY WARRANTY; without even the implied warranty of
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// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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// GNU General Public License for more details.
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//
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// You should have received a copy of the GNU General Public License
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// along with this program; if not, write to the Free Software
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// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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package de.anomic.kelondro;
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import java.io.File;
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import java.io.FileNotFoundException;
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import java.io.FileOutputStream;
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import java.io.IOException;
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import java.io.RandomAccessFile;
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public class kelondroEcoFS {
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/*
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* The EcoFS is a flat file with records of fixed length. The file does not contain
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* any meta information and the first record starts right at file position 0
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* The access rules are in such a way that a minimum of IO operations are necessary
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* Two caches provide a mirror to content in the file: a read cache and a write buffer
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* The read cache contains a number of entries from the file; a mirror that moves
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* whenever information outsite the mirror is requested.
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* The write buffer always exists only at the end of the file. It contains only records
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* that have never been written to the file before. When the write buffer is flushed,
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* the file grows
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* The record file may also shrink when the last entry of the file is removed.
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* Removal of Entries inside the file is not possible, but such entries can be erased
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* by overwriting the data with zero bytes
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* All access to the file is made with byte[] that are generated outsite of this class
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* This class only references byte[] that are handed over to methods of this class.
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*/
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private RandomAccessFile raf;
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private File tablefile;
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protected int recordsize; // number of bytes in one record
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private int cacheindex, cachecount, buffercount; // number of entries in buffer
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private byte[] cache, buffer, zero;
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private static final int maxBuffer = 512;
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public kelondroEcoFS(File tablefile, int recordsize) throws IOException {
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this.tablefile = tablefile;
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this.recordsize = recordsize;
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// initialize zero buffer
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this.zero = new byte[recordsize];
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for (int i = 0; i < recordsize; i++) this.zero[i] = 0;
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// initialize table file
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if (!tablefile.exists()) {
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// make new file
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FileOutputStream fos = null;
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try {
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fos = new FileOutputStream(tablefile);
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} catch (FileNotFoundException e) {
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// should not happen
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e.printStackTrace();
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}
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try { fos.close(); } catch (IOException e) {}
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}
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// open an existing table file
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try {
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raf = new RandomAccessFile(tablefile, "rw");
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} catch (FileNotFoundException e) {
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// should never happen
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e.printStackTrace();
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}
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// initialize cache and buffer
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int maxrecords = Math.max(1, maxBuffer / recordsize);
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cache = new byte[maxrecords * recordsize];
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buffer = new byte[maxrecords * recordsize];
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this.buffercount = 0;
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// first-time read of cache
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fillCache(0);
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}
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public static long tableSize(File tablefile, int recordsize) {
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// returns number of records in table
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if (!tablefile.exists()) return 0;
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long size = tablefile.length();
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assert size % recordsize == 0;
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return size / recordsize;
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}
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public synchronized int size() throws IOException {
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// return the number of records in file plus number of records in buffer
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return filesize() + this.buffercount;
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}
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public File filename() {
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return this.tablefile;
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}
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private int filesize() throws IOException {
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return (int) (raf.length() / recordsize);
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}
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private int inCache(int index) {
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// checks if the index is inside the cache and returns the index offset inside
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// the cache if the index is inside the cache
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// returns -1 if the index is not in the cache
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if ((index >= this.cacheindex) && (index < this.cacheindex + this.cachecount)) {
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return index - this.cacheindex;
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}
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return -1;
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}
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private int inBuffer(int index) throws IOException {
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// checks if the index is inside the buffer and returns the index offset inside
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// the buffer if the index is inside the buffer
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// returns -1 if the index is not in the buffer
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int fs = filesize();
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if ((index >= fs) && (index < fs + this.buffercount)) {
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return index - fs;
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}
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return -1;
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}
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private void fillCache(int index) throws IOException {
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// load cache with copy of disc content; start with record at index
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// if the record would overlap with the write buffer,
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// its start is shifted forward until it fits
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// first check if the index is inside the current cache
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assert inCache(index) < 0;
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if (inCache(index) >= 0) return;
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// calculate new start position
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int fs = this.filesize();
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if (index + this.cache.length / this.recordsize > fs) {
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index = fs - this.cache.length / this.recordsize;
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}
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if (index < 0) index = 0;
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// calculate number of records that shall be stored in the cache
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this.cachecount = Math.min(this.cache.length / this.recordsize, this.filesize() - index);
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assert this.cachecount >= 0;
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// check if we need to read 0 bytes from the file
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this.cacheindex = index;
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if (this.cachecount == 0) return;
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// copy records from file to cache
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raf.seek((long) this.recordsize * (long) index);
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raf.read(this.cache, 0, this.recordsize * this.cachecount);
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}
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private void flushBuffer() {
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// write buffer to end of file
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|
try {
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raf.seek(raf.length());
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raf.write(this.buffer, 0, this.recordsize * this.buffercount);
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||||||
|
} catch (IOException e) {
|
||||||
|
// TODO Auto-generated catch block
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||||||
|
e.printStackTrace();
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||||||
|
}
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this.buffercount = 0;
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||||||
|
}
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|
public synchronized void close() {
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|
flushBuffer();
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||||||
|
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||||||
|
// then close the file
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||||||
|
try {
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|
raf.close();
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||||||
|
} catch (IOException e) {
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||||||
|
e.printStackTrace();
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||||||
|
}
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||||||
|
raf = null;
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||||||
|
buffer = null;
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||||||
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cache = null;
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||||||
|
}
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||||||
|
public synchronized void get(int index, byte[] b, int start) throws IOException {
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|
assert b.length - start >= this.recordsize;
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||||||
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if (index >= size()) throw new IndexOutOfBoundsException("kelondroEcoFS.get(" + index + ") outside bounds (" + this.size() + ")");
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// check if index is inside of cache
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int p = inCache(index);
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int q = (p >= 0) ? -1 : inBuffer(index);
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|
if ((p < 0) && (q < 0)) {
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// the index is outside of cache and buffer index. shift cache window
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|
fillCache(index);
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p = inCache(index);
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||||||
|
assert p >= 0;
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||||||
|
}
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||||||
|
if (p >= 0) {
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// read entry from the cache
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System.arraycopy(this.cache, p * this.recordsize, b, start, this.recordsize);
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||||||
|
return;
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||||||
|
}
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||||||
|
if (q >= 0) {
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||||||
|
// read entry from the buffer
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||||||
|
System.arraycopy(this.buffer, q * this.recordsize, b, start, this.recordsize);
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||||||
|
return;
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||||||
|
}
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||||||
|
assert false;
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||||||
|
}
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||||||
|
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||||||
|
public synchronized void put(int index, byte[] b, int start) throws IOException {
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||||||
|
assert b.length - start >= this.recordsize;
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||||||
|
if (index > size()) throw new IndexOutOfBoundsException("kelondroEcoFS.put(" + index + ") outside bounds (" + this.size() + ")");
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||||||
|
// check if this is an empty entry
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||||||
|
if (isClean(b , start, this.recordsize)) {
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||||||
|
clean(index);
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||||||
|
return;
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||||||
|
}
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||||||
|
// check if index is inside of cache
|
||||||
|
int p = inCache(index);
|
||||||
|
int q = (p >= 0) ? -1 : inBuffer(index);
|
||||||
|
if (p >= 0) {
|
||||||
|
// write entry to the cache and to the file
|
||||||
|
System.arraycopy(b, start, this.cache, p * this.recordsize, this.recordsize);
|
||||||
|
raf.seek((long) index * (long) this.recordsize);
|
||||||
|
raf.write(b, start, this.recordsize);
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
if (q >= 0) {
|
||||||
|
// write entry to the buffer
|
||||||
|
System.arraycopy(b, start, this.buffer, q * this.recordsize, this.recordsize);
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
if (index == size()) {
|
||||||
|
// append the record to the end of the file;
|
||||||
|
|
||||||
|
// look if there is space in the buffer
|
||||||
|
int bufferpos = index - filesize();
|
||||||
|
if (bufferpos >= this.buffer.length / this.recordsize) {
|
||||||
|
assert this.buffercount == this.buffer.length / this.recordsize;
|
||||||
|
// the record does not fit in current buffer
|
||||||
|
// write buffer
|
||||||
|
flushBuffer();
|
||||||
|
// write new entry to buffer
|
||||||
|
System.arraycopy(b, start, this.buffer, 0, this.recordsize);
|
||||||
|
this.buffercount = 1;
|
||||||
|
} else {
|
||||||
|
System.arraycopy(b, start, this.buffer, bufferpos * this.recordsize, this.recordsize);
|
||||||
|
this.buffercount++;
|
||||||
|
}
|
||||||
|
assert this.buffercount <= this.buffer.length / this.recordsize;
|
||||||
|
} else {
|
||||||
|
// write the record directly to the file,
|
||||||
|
// do not care about the cache; this case was checked before
|
||||||
|
raf.seek((long) index * (long) this.recordsize);
|
||||||
|
raf.write(b, start, this.recordsize);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
public synchronized void add(byte[] b, int start) throws IOException {
|
||||||
|
put(size(), b, start);
|
||||||
|
}
|
||||||
|
|
||||||
|
private boolean isClean(byte[] b, int offset, int length) {
|
||||||
|
for (int i = 0; i < length; i++) {
|
||||||
|
if (b[i + offset] != 0) return false;
|
||||||
|
}
|
||||||
|
return true;
|
||||||
|
}
|
||||||
|
|
||||||
|
private boolean isClean(int index) throws IOException {
|
||||||
|
assert index < size();
|
||||||
|
// check if index is inside of cache
|
||||||
|
int p = inCache(index);
|
||||||
|
int q = (p >= 0) ? -1 : inBuffer(index);
|
||||||
|
if ((p < 0) && (q < 0)) {
|
||||||
|
// the index is outside of cache and buffer index. shift cache window
|
||||||
|
fillCache(index);
|
||||||
|
p = inCache(index);
|
||||||
|
assert p >= 0;
|
||||||
|
}
|
||||||
|
if (p >= 0) {
|
||||||
|
// check entry from the cache
|
||||||
|
return isClean(this.cache, p * this.recordsize, this.recordsize);
|
||||||
|
}
|
||||||
|
if (q >= 0) {
|
||||||
|
// check entry from the buffer
|
||||||
|
return isClean(this.buffer, q * this.recordsize, this.recordsize);
|
||||||
|
}
|
||||||
|
assert false;
|
||||||
|
return false;
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized void clean(int index, byte[] b, int start) throws IOException {
|
||||||
|
// removes an entry by cleaning (writing zero bytes to the file)
|
||||||
|
// the entry that had been at the specific place before is copied to the given array b
|
||||||
|
// if the last entry in the file was cleaned, the file shrinks by the given record
|
||||||
|
// this is like
|
||||||
|
// get(index, b, start);
|
||||||
|
// put(index, zero, 0);
|
||||||
|
// plus an additional check if the file should shrink
|
||||||
|
|
||||||
|
assert b.length - start >= this.recordsize;
|
||||||
|
if (index >= size()) throw new IndexOutOfBoundsException("kelondroEcoFS.clean(" + index + ") outside bounds (" + this.size() + ")");
|
||||||
|
if (index == size() - 1) {
|
||||||
|
cleanLast(b, start);
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
|
||||||
|
// check if index is inside of cache
|
||||||
|
int p = inCache(index);
|
||||||
|
int q = (p >= 0) ? -1 : inBuffer(index);
|
||||||
|
if ((p < 0) && (q < 0)) {
|
||||||
|
// the index is outside of cache and buffer index. shift cache window
|
||||||
|
fillCache(index);
|
||||||
|
p = inCache(index);
|
||||||
|
assert p >= 0;
|
||||||
|
}
|
||||||
|
if (p >= 0) {
|
||||||
|
// read entry from the cache
|
||||||
|
System.arraycopy(this.cache, p * this.recordsize, b, start, this.recordsize);
|
||||||
|
|
||||||
|
// write zero bytes to the cache and to the file
|
||||||
|
System.arraycopy(zero, 0, this.cache, p * this.recordsize, this.recordsize);
|
||||||
|
this.raf.seek((long) index * (long) this.recordsize);
|
||||||
|
this.raf.write(zero, 0, this.recordsize);
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
if (q >= 0) {
|
||||||
|
// read entry from the buffer
|
||||||
|
System.arraycopy(this.buffer, q * this.recordsize, b, start, this.recordsize);
|
||||||
|
// write zero to the buffer
|
||||||
|
System.arraycopy(zero, 0, this.buffer, q * this.recordsize, this.recordsize);
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
assert false;
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized void clean(int index) throws IOException {
|
||||||
|
if (index >= size()) throw new IndexOutOfBoundsException("kelondroEcoFS.clean(" + index + ") outside bounds (" + this.size() + ")");
|
||||||
|
if (index == size() - 1) {
|
||||||
|
cleanLast();
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
|
||||||
|
// check if index is inside of cache
|
||||||
|
int p = inCache(index);
|
||||||
|
int q = (p >= 0) ? -1 : inBuffer(index);
|
||||||
|
if (p >= 0) {
|
||||||
|
// write zero bytes to the cache and to the file
|
||||||
|
System.arraycopy(zero, 0, this.cache, p * this.recordsize, this.recordsize);
|
||||||
|
raf.seek((long) index * (long) this.recordsize);
|
||||||
|
raf.write(zero, 0, this.recordsize);
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
if (q >= 0) {
|
||||||
|
// write zero to the buffer
|
||||||
|
System.arraycopy(zero, 0, this.buffer, q * this.recordsize, this.recordsize);
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
|
||||||
|
raf.seek((long) index * (long) this.recordsize);
|
||||||
|
raf.write(zero, 0, this.recordsize);
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized void cleanLast(byte[] b, int start) throws IOException {
|
||||||
|
cleanLast0(b, start);
|
||||||
|
int i;
|
||||||
|
while (((i = size()) > 0) && (isClean(i - 1))) {
|
||||||
|
//System.out.println("Extra clean/1: before size = " + size());
|
||||||
|
cleanLast0();
|
||||||
|
//System.out.println(" after size = " + size());
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
private synchronized void cleanLast0(byte[] b, int start) throws IOException {
|
||||||
|
// this is like
|
||||||
|
// clean(this.size() - 1, b, start);
|
||||||
|
|
||||||
|
assert b.length - start >= this.recordsize;
|
||||||
|
// check if index is inside of cache
|
||||||
|
int p = inCache(this.size() - 1);
|
||||||
|
int q = (p >= 0) ? -1 : inBuffer(this.size() - 1);
|
||||||
|
if ((p < 0) && (q < 0)) {
|
||||||
|
// the index is outside of cache and buffer index. shift cache window
|
||||||
|
fillCache(this.size() - 1);
|
||||||
|
p = inCache(this.size() - 1);
|
||||||
|
assert p >= 0;
|
||||||
|
}
|
||||||
|
if (p >= 0) {
|
||||||
|
// read entry from the cache
|
||||||
|
System.arraycopy(this.cache, p * this.recordsize, b, start, this.recordsize);
|
||||||
|
// shrink cache and file
|
||||||
|
assert this.buffercount == 0;
|
||||||
|
this.raf.setLength((long) (this.size() - 1) * (long) this.recordsize);
|
||||||
|
this.cachecount--;
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
if (q >= 0) {
|
||||||
|
// read entry from the buffer
|
||||||
|
System.arraycopy(this.buffer, q * this.recordsize, b, start, this.recordsize);
|
||||||
|
// shrink buffer
|
||||||
|
assert this.buffercount > 0;
|
||||||
|
this.buffercount--;
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
assert false;
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized void cleanLast() throws IOException {
|
||||||
|
cleanLast0();
|
||||||
|
int i;
|
||||||
|
while (((i = size()) > 0) && (isClean(i - 1))) {
|
||||||
|
//System.out.println("Extra clean/0: before size = " + size());
|
||||||
|
cleanLast0();
|
||||||
|
//System.out.println(" after size = " + size());
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
private synchronized void cleanLast0() throws IOException {
|
||||||
|
|
||||||
|
// check if index is inside of cache
|
||||||
|
int p = inCache(this.size() - 1);
|
||||||
|
int q = (p >= 0) ? -1 : inBuffer(this.size() - 1);
|
||||||
|
if (p >= 0) {
|
||||||
|
// shrink cache and file
|
||||||
|
assert this.buffercount == 0;
|
||||||
|
this.raf.setLength((long) (this.size() - 1) * (long) this.recordsize);
|
||||||
|
this.cachecount--;
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
if (q >= 0) {
|
||||||
|
// shrink buffer
|
||||||
|
assert this.buffercount > 0;
|
||||||
|
this.buffercount--;
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
// check if file should shrink
|
||||||
|
assert this.buffercount == 0;
|
||||||
|
this.raf.setLength((long) (this.size() - 1) * (long) this.recordsize);
|
||||||
|
}
|
||||||
|
|
||||||
|
public static void main(String[] args) {
|
||||||
|
// open a file, add one entry and exit
|
||||||
|
File f = new File(args[0]);
|
||||||
|
if (f.exists()) f.delete();
|
||||||
|
try {
|
||||||
|
kelondroEcoFS t = new kelondroEcoFS(f, 8);
|
||||||
|
byte[] b = new byte[8];
|
||||||
|
t.add("01234567".getBytes(), 0);
|
||||||
|
t.add("ABCDEFGH".getBytes(), 0);
|
||||||
|
t.add("abcdefgh".getBytes(), 0);
|
||||||
|
t.add("--------".getBytes(), 0);
|
||||||
|
t.add("********".getBytes(), 0);
|
||||||
|
for (int i = 0; i < 1000; i++) t.add("++++++++".getBytes(), 0);
|
||||||
|
t.add("=======0".getBytes(), 0);
|
||||||
|
t.add("=======1".getBytes(), 0);
|
||||||
|
t.add("=======2".getBytes(), 0);
|
||||||
|
t.cleanLast(b, 0);
|
||||||
|
System.out.println(new String(b));
|
||||||
|
t.clean(2, b, 0);
|
||||||
|
System.out.println(new String(b));
|
||||||
|
t.get(1, b, 0);
|
||||||
|
System.out.println(new String(b));
|
||||||
|
t.put(1, "AbCdEfGh".getBytes(), 0);
|
||||||
|
t.get(1, b, 0);
|
||||||
|
System.out.println(new String(b));
|
||||||
|
t.get(3, b, 0);
|
||||||
|
System.out.println(new String(b));
|
||||||
|
t.get(4, b, 0);
|
||||||
|
System.out.println(new String(b));
|
||||||
|
System.out.println("size = " + t.size());
|
||||||
|
t.clean(t.size() - 2);
|
||||||
|
t.cleanLast();
|
||||||
|
System.out.println("size = " + t.size());
|
||||||
|
t.close();
|
||||||
|
} catch (IOException e) {
|
||||||
|
e.printStackTrace();
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
@ -0,0 +1,463 @@
|
|||||||
|
// kelondroEcoIndex.java
|
||||||
|
// (C) 2008 by Michael Peter Christen; mc@yacy.net, Frankfurt a. M., Germany
|
||||||
|
// first published 14.01.2008 on http://yacy.net
|
||||||
|
//
|
||||||
|
// $LastChangedDate: 2006-04-02 22:40:07 +0200 (So, 02 Apr 2006) $
|
||||||
|
// $LastChangedRevision: 1986 $
|
||||||
|
// $LastChangedBy: orbiter $
|
||||||
|
//
|
||||||
|
// LICENSE
|
||||||
|
//
|
||||||
|
// This program is free software; you can redistribute it and/or modify
|
||||||
|
// it under the terms of the GNU General Public License as published by
|
||||||
|
// the Free Software Foundation; either version 2 of the License, or
|
||||||
|
// (at your option) any later version.
|
||||||
|
//
|
||||||
|
// This program is distributed in the hope that it will be useful,
|
||||||
|
// but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||||
|
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||||
|
// GNU General Public License for more details.
|
||||||
|
//
|
||||||
|
// You should have received a copy of the GNU General Public License
|
||||||
|
// along with this program; if not, write to the Free Software
|
||||||
|
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
|
||||||
|
package de.anomic.kelondro;
|
||||||
|
|
||||||
|
import java.io.File;
|
||||||
|
import java.io.FileNotFoundException;
|
||||||
|
import java.io.FileOutputStream;
|
||||||
|
import java.io.IOException;
|
||||||
|
import java.util.Date;
|
||||||
|
import java.util.Iterator;
|
||||||
|
import java.util.List;
|
||||||
|
import java.util.TreeMap;
|
||||||
|
|
||||||
|
import de.anomic.kelondro.kelondroRow.Entry;
|
||||||
|
import de.anomic.server.serverMemory;
|
||||||
|
|
||||||
|
/*
|
||||||
|
* The EcoIndex builts upon the EcoFS and tries to reduce the number of IO requests that the
|
||||||
|
* EcoFS must do to a minimum. In best cases, no IO has to be done for read operations (complete database shadow in RAM)
|
||||||
|
* and a rare number of write IO operations must be done for a large number of table-writings (using the write buffer of EcoFS)
|
||||||
|
* To make the EcoIndex scalable in question of available RAM, there are two elements that must be scalable:
|
||||||
|
* - the access index can be either completely in RAM (kelondroRAMIndex) or it is file-based (kelondroTree)
|
||||||
|
* - the content cache can be either a complete RAM-based shadow of the File, or empty.
|
||||||
|
* The content cache can also be deleted during run-time, if the available RAM gets too low.
|
||||||
|
*
|
||||||
|
*/
|
||||||
|
|
||||||
|
public class kelondroEcoTable implements kelondroIndex {
|
||||||
|
|
||||||
|
// static tracker objects
|
||||||
|
private static TreeMap<String, kelondroEcoTable> tableTracker = new TreeMap<String, kelondroEcoTable>();
|
||||||
|
|
||||||
|
private kelondroRowSet table;
|
||||||
|
private kelondroBytesIntMap index;
|
||||||
|
private kelondroBufferedEcoFS file;
|
||||||
|
private kelondroRow rowdef, taildef;
|
||||||
|
private int buffersize;
|
||||||
|
|
||||||
|
public kelondroEcoTable(File tablefile, kelondroRow rowdef, int buffersize) throws IOException {
|
||||||
|
this.rowdef = rowdef;
|
||||||
|
this.buffersize = buffersize;
|
||||||
|
assert rowdef.primaryKeyIndex == 0;
|
||||||
|
// define the taildef, a row like the rowdef but without the first column
|
||||||
|
kelondroColumn[] cols = new kelondroColumn[rowdef.columns() - 1];
|
||||||
|
for (int i = 0; i < cols.length; i++) {
|
||||||
|
cols[i] = rowdef.column(i + 1);
|
||||||
|
}
|
||||||
|
this.taildef = new kelondroRow(cols, kelondroNaturalOrder.naturalOrder, rowdef.primaryKeyIndex);
|
||||||
|
|
||||||
|
// initialize table file
|
||||||
|
if (!tablefile.exists()) {
|
||||||
|
// make new file
|
||||||
|
FileOutputStream fos = null;
|
||||||
|
try {
|
||||||
|
fos = new FileOutputStream(tablefile);
|
||||||
|
} catch (FileNotFoundException e) {
|
||||||
|
// should not happen
|
||||||
|
e.printStackTrace();
|
||||||
|
}
|
||||||
|
try { fos.close(); } catch (IOException e) {}
|
||||||
|
}
|
||||||
|
|
||||||
|
// open an existing table file
|
||||||
|
try {
|
||||||
|
this.file = new kelondroBufferedEcoFS(new kelondroEcoFS(tablefile, rowdef.objectsize), this.buffersize);
|
||||||
|
} catch (FileNotFoundException e) {
|
||||||
|
// should never happen
|
||||||
|
e.printStackTrace();
|
||||||
|
}
|
||||||
|
|
||||||
|
// initialize index and copy table
|
||||||
|
int records = file.size();
|
||||||
|
long neededRAM4table = records * taildef.objectsize * 3 / 2;
|
||||||
|
table = (serverMemory.request(neededRAM4table, true)) ? new kelondroRowSet(taildef, records + 1) : null;
|
||||||
|
index = new kelondroBytesIntMap(rowdef.primaryKeyLength, rowdef.objectOrder, records + 1);
|
||||||
|
|
||||||
|
// read all elements from the file into the copy table
|
||||||
|
byte[] record = new byte[rowdef.objectsize];
|
||||||
|
byte[] key = new byte[rowdef.primaryKeyLength];
|
||||||
|
for (int i = 0; i < records; i++) {
|
||||||
|
// read entry
|
||||||
|
file.get(i, record, 0);
|
||||||
|
|
||||||
|
// write the key into the index table
|
||||||
|
System.arraycopy(record, 0, key, 0, rowdef.primaryKeyLength);
|
||||||
|
index.addi(key, i);
|
||||||
|
|
||||||
|
// write the tail into the table
|
||||||
|
if (table != null) table.addUnique(taildef.newEntry(record, rowdef.primaryKeyLength, true));
|
||||||
|
}
|
||||||
|
|
||||||
|
// track this table
|
||||||
|
tableTracker.put(tablefile.toString(), this);
|
||||||
|
}
|
||||||
|
|
||||||
|
public static long tableSize(File tablefile, int recordsize) {
|
||||||
|
// returns number of records in table
|
||||||
|
return kelondroEcoFS.tableSize(tablefile, recordsize);
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized void addUnique(Entry row) throws IOException {
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size()));
|
||||||
|
int i = file.size();
|
||||||
|
index.addi(row.getPrimaryKeyBytes(), i);
|
||||||
|
if (table != null) {
|
||||||
|
assert table.size() == i;
|
||||||
|
table.addUnique(taildef.newEntry(row.bytes(), rowdef.primaryKeyLength, true));
|
||||||
|
}
|
||||||
|
file.put(i, row.bytes(), 0);
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized void addUniqueMultiple(List<Entry> rows) throws IOException {
|
||||||
|
Iterator<Entry> i = rows.iterator();
|
||||||
|
while (i.hasNext()) {
|
||||||
|
addUnique(i.next());
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
public void close() {
|
||||||
|
file.close();
|
||||||
|
file = null;
|
||||||
|
}
|
||||||
|
|
||||||
|
public void finalize() {
|
||||||
|
if (this.file != null) this.close();
|
||||||
|
}
|
||||||
|
|
||||||
|
public String filename() {
|
||||||
|
return this.file.filename().toString();
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized Entry get(byte[] key) throws IOException {
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size()));
|
||||||
|
int i = index.geti(key);
|
||||||
|
if (i == -1) return null;
|
||||||
|
byte[] b = new byte[rowdef.objectsize];
|
||||||
|
if (table == null) {
|
||||||
|
// read row from the file
|
||||||
|
file.get(i, b, 0);
|
||||||
|
} else {
|
||||||
|
// construct the row using the copy in RAM
|
||||||
|
kelondroRow.Entry v = table.get(i);
|
||||||
|
assert v != null;
|
||||||
|
assert key.length == rowdef.primaryKeyLength;
|
||||||
|
System.arraycopy(key, 0, b, 0, key.length);
|
||||||
|
System.arraycopy(v.bytes(), 0, b, rowdef.primaryKeyLength, rowdef.objectsize - rowdef.primaryKeyLength);
|
||||||
|
}
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size()));
|
||||||
|
return rowdef.newEntry(b);
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized boolean has(byte[] key) throws IOException {
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size()));
|
||||||
|
return index.geti(key) >= 0;
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized kelondroCloneableIterator<byte[]> keys(boolean up, byte[] firstKey) throws IOException {
|
||||||
|
return index.keys(up, firstKey);
|
||||||
|
}
|
||||||
|
|
||||||
|
public kelondroProfile profile() {
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized Entry put(Entry row) throws IOException {
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size()));
|
||||||
|
int i = index.geti(row.getPrimaryKeyBytes());
|
||||||
|
if (i == -1) {
|
||||||
|
addUnique(row);
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
|
||||||
|
byte[] b = new byte[rowdef.objectsize];
|
||||||
|
if (table == null) {
|
||||||
|
// read old value
|
||||||
|
file.get(i, b, 0);
|
||||||
|
// write new value
|
||||||
|
file.put(i, row.bytes(), 0);
|
||||||
|
} else {
|
||||||
|
// read old value
|
||||||
|
kelondroRow.Entry v = table.get(i);
|
||||||
|
System.arraycopy(row.getPrimaryKeyBytes(), 0, b, 0, rowdef.primaryKeyLength);
|
||||||
|
System.arraycopy(v.bytes(), 0, b, rowdef.primaryKeyLength, rowdef.objectsize - rowdef.primaryKeyLength);
|
||||||
|
// write new value
|
||||||
|
table.set(i, taildef.newEntry(row.bytes(), rowdef.primaryKeyLength, true));
|
||||||
|
file.put(i, row.bytes(), 0);
|
||||||
|
}
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size()));
|
||||||
|
// return old value
|
||||||
|
return rowdef.newEntry(b);
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized Entry put(Entry row, Date entryDate) throws IOException {
|
||||||
|
return put(row);
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized void putMultiple(List<Entry> rows) throws IOException {
|
||||||
|
Iterator<Entry> i = rows.iterator();
|
||||||
|
while (i.hasNext()) {
|
||||||
|
put(i.next());
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized Entry remove(byte[] key, boolean keepOrder) throws IOException {
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size()));
|
||||||
|
assert keepOrder == false; // this class cannot keep the order during a remove
|
||||||
|
int i = index.geti(key);
|
||||||
|
if (i == -1) return null; // nothing to do
|
||||||
|
|
||||||
|
// prepare result
|
||||||
|
byte[] b = new byte[rowdef.objectsize];
|
||||||
|
byte[] p = new byte[rowdef.objectsize];
|
||||||
|
if (table == null) {
|
||||||
|
index.removei(key);
|
||||||
|
file.get(i, b, 0);
|
||||||
|
file.cleanLast(p, 0);
|
||||||
|
file.put(i, p, 0);
|
||||||
|
byte[] k = new byte[rowdef.primaryKeyLength];
|
||||||
|
System.arraycopy(p, 0, k, 0, rowdef.primaryKeyLength);
|
||||||
|
index.puti(k, i);
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size()));
|
||||||
|
} else {
|
||||||
|
kelondroRow.Entry v = table.get(i);
|
||||||
|
assert key.length == rowdef.primaryKeyLength;
|
||||||
|
System.arraycopy(key, 0, b, 0, key.length);
|
||||||
|
System.arraycopy(v.bytes(), 0, b, rowdef.primaryKeyLength, taildef.objectsize);
|
||||||
|
if (i == index.size() - 1) {
|
||||||
|
// special handling if the entry is the last entry in the file
|
||||||
|
index.removei(key);
|
||||||
|
table.removeRow(i, false);
|
||||||
|
file.clean(i);
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size()));
|
||||||
|
} else {
|
||||||
|
// switch values
|
||||||
|
kelondroRow.Entry te = table.removeOne();
|
||||||
|
table.set(i, te);
|
||||||
|
|
||||||
|
file.cleanLast(p, 0);
|
||||||
|
file.put(i, p, 0);
|
||||||
|
kelondroRow.Entry lr = rowdef.newEntry(p);
|
||||||
|
|
||||||
|
index.removei(key);
|
||||||
|
index.puti(lr.getPrimaryKeyBytes(), i);
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size())) : "table.size() = " + table.size() + ", index.size() = " + index.size();
|
||||||
|
}
|
||||||
|
}
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size()));
|
||||||
|
return rowdef.newEntry(b);
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized Entry removeOne() throws IOException {
|
||||||
|
assert (file.size() == index.size());
|
||||||
|
assert ((table == null) || (table.size() == index.size()));
|
||||||
|
byte[] le = new byte[rowdef.objectsize];
|
||||||
|
file.cleanLast(le, 0);
|
||||||
|
kelondroRow.Entry lr = rowdef.newEntry(le);
|
||||||
|
int i = index.removei(lr.getPrimaryKeyBytes());
|
||||||
|
assert i >= 0;
|
||||||
|
table.removeRow(i, false);
|
||||||
|
return lr;
|
||||||
|
}
|
||||||
|
|
||||||
|
public void reset() throws IOException {
|
||||||
|
File f = file.filename();
|
||||||
|
file.close();
|
||||||
|
f.delete();
|
||||||
|
|
||||||
|
// make new file
|
||||||
|
FileOutputStream fos = null;
|
||||||
|
try {
|
||||||
|
fos = new FileOutputStream(f);
|
||||||
|
} catch (FileNotFoundException e) {
|
||||||
|
// should not happen
|
||||||
|
e.printStackTrace();
|
||||||
|
}
|
||||||
|
try { fos.close(); } catch (IOException e) {}
|
||||||
|
|
||||||
|
|
||||||
|
// open an existing table file
|
||||||
|
try {
|
||||||
|
this.file = new kelondroBufferedEcoFS(new kelondroEcoFS(f, rowdef.objectsize), this.buffersize);
|
||||||
|
} catch (FileNotFoundException e) {
|
||||||
|
// should never happen
|
||||||
|
e.printStackTrace();
|
||||||
|
}
|
||||||
|
|
||||||
|
// initialize index and copy table
|
||||||
|
table = new kelondroRowSet(taildef, 1);
|
||||||
|
index = new kelondroBytesIntMap(rowdef.primaryKeyLength, rowdef.objectOrder, 1);
|
||||||
|
}
|
||||||
|
|
||||||
|
public kelondroRow row() {
|
||||||
|
return this.rowdef;
|
||||||
|
}
|
||||||
|
|
||||||
|
public synchronized int size() {
|
||||||
|
return index.size();
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
public synchronized kelondroCloneableIterator<Entry> rows(boolean up, byte[] firstKey) throws IOException {
|
||||||
|
return new rowIterator(up, firstKey);
|
||||||
|
}
|
||||||
|
|
||||||
|
public class rowIterator implements kelondroCloneableIterator<Entry> {
|
||||||
|
Iterator<byte[]> i;
|
||||||
|
boolean up;
|
||||||
|
byte[] fk;
|
||||||
|
int c;
|
||||||
|
|
||||||
|
public rowIterator(boolean up, byte[] firstKey) throws IOException {
|
||||||
|
this.up = up;
|
||||||
|
this.fk = firstKey;
|
||||||
|
this.i = index.keys(up, firstKey);
|
||||||
|
this.c = -1;
|
||||||
|
}
|
||||||
|
|
||||||
|
public kelondroCloneableIterator<Entry> clone(Object modifier) {
|
||||||
|
try {
|
||||||
|
return new rowIterator(up, fk);
|
||||||
|
} catch (IOException e) {
|
||||||
|
e.printStackTrace();
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
public boolean hasNext() {
|
||||||
|
return i.hasNext();
|
||||||
|
}
|
||||||
|
|
||||||
|
public Entry next() {
|
||||||
|
byte[] k = i.next();
|
||||||
|
try {
|
||||||
|
this.c = index.geti(k);
|
||||||
|
} catch (IOException e) {
|
||||||
|
e.printStackTrace();
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
byte[] b = new byte[rowdef.objectsize];
|
||||||
|
if (table == null) {
|
||||||
|
// read from file
|
||||||
|
try {
|
||||||
|
file.get(this.c, b, 0);
|
||||||
|
} catch (IOException e) {
|
||||||
|
e.printStackTrace();
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
} else {
|
||||||
|
// compose from table and key
|
||||||
|
kelondroRow.Entry v = table.get(this.c);
|
||||||
|
System.arraycopy(k, 0, b, 0, rowdef.primaryKeyLength);
|
||||||
|
System.arraycopy(v.bytes(), 0, b, rowdef.primaryKeyLength, taildef.objectsize);
|
||||||
|
}
|
||||||
|
return rowdef.newEntry(b);
|
||||||
|
}
|
||||||
|
|
||||||
|
public void remove() {
|
||||||
|
throw new UnsupportedOperationException("no remove in EcoTable");
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
public static kelondroIndex testTable(File f, String testentities) throws IOException {
|
||||||
|
if (f.exists()) f.delete();
|
||||||
|
kelondroRow rowdef = new kelondroRow("byte[] a-4, byte[] b-4", kelondroNaturalOrder.naturalOrder, 0);
|
||||||
|
kelondroIndex tt = new kelondroEcoTable(f, rowdef, 100);
|
||||||
|
byte[] b;
|
||||||
|
kelondroRow.Entry row = rowdef.newEntry();
|
||||||
|
for (int i = 0; i < testentities.length(); i++) {
|
||||||
|
b = kelondroTree.testWord(testentities.charAt(i));
|
||||||
|
row.setCol(0, b);
|
||||||
|
row.setCol(1, b);
|
||||||
|
tt.put(row);
|
||||||
|
}
|
||||||
|
return tt;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static void bigtest(int elements, File testFile) {
|
||||||
|
System.out.println("starting big test with " + elements + " elements:");
|
||||||
|
long start = System.currentTimeMillis();
|
||||||
|
String[] s = kelondroTree.permutations(elements);
|
||||||
|
kelondroIndex tt;
|
||||||
|
try {
|
||||||
|
for (int i = 0; i < s.length; i++) {
|
||||||
|
System.out.println("*** probing tree " + i + " for permutation " + s[i]);
|
||||||
|
// generate tree and delete elements
|
||||||
|
tt = testTable(testFile, s[i]);
|
||||||
|
if (kelondroTree.countElements(tt) != tt.size()) {
|
||||||
|
System.out.println("wrong size for " + s[i]);
|
||||||
|
}
|
||||||
|
tt.close();
|
||||||
|
for (int j = 0; j < s.length; j++) {
|
||||||
|
tt = testTable(testFile, s[i]);
|
||||||
|
// delete by permutation j
|
||||||
|
for (int elt = 0; elt < s[j].length(); elt++) {
|
||||||
|
tt.remove(kelondroTree.testWord(s[j].charAt(elt)), false);
|
||||||
|
if (kelondroTree.countElements(tt) != tt.size()) {
|
||||||
|
System.out.println("ERROR! wrong size for probe tree " + s[i] + "; probe delete " + s[j] + "; position " + elt);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
tt.close();
|
||||||
|
}
|
||||||
|
}
|
||||||
|
System.out.println("FINISHED test after " + ((System.currentTimeMillis() - start) / 1000) + " seconds.");
|
||||||
|
} catch (Exception e) {
|
||||||
|
e.printStackTrace();
|
||||||
|
System.out.println("TERMINATED");
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
public static void main(String[] args) {
|
||||||
|
// open a file, add one entry and exit
|
||||||
|
File f = new File(args[0]);
|
||||||
|
bigtest(5, f);
|
||||||
|
/*
|
||||||
|
kelondroRow row = new kelondroRow("byte[] key-4, byte[] x-5", kelondroNaturalOrder.naturalOrder, 0);
|
||||||
|
try {
|
||||||
|
kelondroEcoTable t = new kelondroEcoTable(f, row);
|
||||||
|
kelondroRow.Entry entry = row.newEntry();
|
||||||
|
entry.setCol(0, "abcd".getBytes());
|
||||||
|
entry.setCol(1, "dummy".getBytes());
|
||||||
|
t.put(entry);
|
||||||
|
t.close();
|
||||||
|
} catch (IOException e) {
|
||||||
|
e.printStackTrace();
|
||||||
|
}
|
||||||
|
*/
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
Loading…
Reference in new issue