// kelondroBLOBHeap.java // (C) 2008 by Michael Peter Christen; mc@yacy.net, Frankfurt a. M., Germany // first published 09.07.2008 on http://yacy.net // // This is a part of YaCy, a peer-to-peer based web search engine // // $LastChangedDate: 2008-03-14 01:16:04 +0100 (Fr, 14 Mrz 2008) $ // $LastChangedRevision: 4558 $ // $LastChangedBy: orbiter $ // // LICENSE // // This program is free software; you can redistribute it and/or modify // it under the terms of the GNU General Public License as published by // the Free Software Foundation; either version 2 of the License, or // (at your option) any later version. // // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA package de.anomic.kelondro.blob; import java.io.File; import java.io.IOException; import java.util.HashMap; import java.util.Iterator; import java.util.Map; import de.anomic.kelondro.io.AbstractRandomAccess; import de.anomic.kelondro.order.ByteOrder; import de.anomic.kelondro.order.CloneableIterator; import de.anomic.kelondro.order.NaturalOrder; public final class BLOBHeap extends BLOBHeapModifier implements BLOB { private HashMap buffer; // a write buffer to limit IO to the file; attention: Maps cannot use byte[] as key private int buffersize; // bytes that are buffered in buffer private int buffermax; // maximum size of the buffer /* * This class implements a BLOB management based on a sequence of records in a random access file * The data structure is: * file :== record* * record :== reclen key blob * reclen :== <4 byte integer == length of key and blob> * key :== * blob :== * that means that each record has the size reclen+4 * * The elements are organized in two data structures: * index : key/seek relation for used records * free> : list of {size, seek} pairs denoting space and position of free records * * Because the blob sizes are stored with integers, one entry may not exceed 2GB * * If a record is removed, it becomes a free record. * New records are either appended to the end of the file or filled into a free record. * A free record must either fit exactly to the size of the new record, or an old record is splitted * into a filled and a new, smaller empty record. */ /** * create a heap file: a arbitrary number of BLOBs, indexed by an access key * The heap file will be indexed upon initialization. * @param heapFile * @param keylength * @param ordering * @throws IOException */ public BLOBHeap( final File heapFile, final int keylength, final ByteOrder ordering, int buffermax) throws IOException { super(heapFile, keylength, ordering); this.buffermax = buffermax; this.buffer = new HashMap(); this.buffersize = 0; /* // DEBUG Iterator i = index.keys(true, null); //byte[] b; int c = 0; while (i.hasNext()) { key = i.next(); System.out.println("*** DEBUG BLOBHeap " + this.name() + " KEY=" + new String(key)); //b = get(key); //System.out.println("BLOB=" + new String(b)); //System.out.println(); c++; if (c >= 20) break; } System.out.println("*** DEBUG - counted " + c + " BLOBs"); */ } /** * the number of BLOBs in the heap * @return the number of BLOBs in the heap */ public synchronized int size() { return super.size() + this.buffer.size(); } /** * test if a key is in the heap file. This does not need any IO, because it uses only the ram index * @param key * @return true if the key exists, false otherwise */ public synchronized boolean has(final byte[] key) { assert index != null; assert index.row().primaryKeyLength == key.length : index.row().primaryKeyLength + "!=" + key.length; // check the buffer if (this.buffer.containsKey(new String(key))) return true; return super.has(key); } /** * add a BLOB to the heap: this adds the blob always to the end of the file * @param key * @param blob * @throws IOException */ private void add(final byte[] key, final byte[] blob) throws IOException { assert blob.length > 0; assert key.length == this.keylength; assert index.row().primaryKeyLength == key.length : index.row().primaryKeyLength + "!=" + key.length; if ((blob == null) || (blob.length == 0)) return; final int pos = (int) file.length(); file.seek(pos); file.writeInt(key.length + blob.length); file.write(key); file.write(blob, 0, blob.length); index.putl(key, pos); } /** * flush the buffer completely * this is like adding all elements of the buffer, but it needs only one IO access * @throws IOException */ private void flushBuffer() throws IOException { // check size of buffer Iterator> i = this.buffer.entrySet().iterator(); int l = 0; while (i.hasNext()) l += i.next().getValue().length; assert l == this.buffersize; // append all contents of the buffer into one byte[] i = this.buffer.entrySet().iterator(); final int pos = (int) file.length(); int posFile = pos; int posBuffer = 0; byte[] ba = new byte[l + (4 + this.index.row().primaryKeyLength) * this.buffer.size()]; Map.Entry entry; byte[] key, blob, b; while (i.hasNext()) { entry = i.next(); key = entry.getKey().getBytes(); blob = entry.getValue(); index.putl(key, posFile); b = AbstractRandomAccess.int2array(key.length + blob.length); assert b.length == 4; System.arraycopy(b, 0, ba, posBuffer, 4); System.arraycopy(key, 0, ba, posBuffer + 4, key.length); System.arraycopy(blob, 0, ba, posBuffer + 4 + key.length, blob.length); posFile += 4 + key.length + blob.length; posBuffer += 4 + key.length + blob.length; } assert ba.length == posBuffer; // must fit exactly this.file.seek(pos); this.file.write(ba); this.buffer.clear(); this.buffersize = 0; } /** * read a blob from the heap * @param key * @return * @throws IOException */ public synchronized byte[] get(final byte[] key) throws IOException { assert index.row().primaryKeyLength == key.length : index.row().primaryKeyLength + "!=" + key.length; // check the buffer byte[] blob = this.buffer.get(new String(key)); if (blob != null) return blob; return super.get(key); } /** * retrieve the size of the BLOB * @param key * @return the size of the BLOB or -1 if the BLOB does not exist * @throws IOException */ public synchronized long length(byte[] key) throws IOException { assert index.row().primaryKeyLength == key.length : index.row().primaryKeyLength + "!=" + key.length; // check the buffer byte[] blob = this.buffer.get(new String(key)); if (blob != null) return blob.length; return super.length(key); } /** * clears the content of the database * @throws IOException */ public synchronized void clear() throws IOException { this.buffer.clear(); this.buffersize = 0; super.clear(); } /** * close the BLOB table */ public synchronized void close() { if (file != null) { try { flushBuffer(); } catch (IOException e) { e.printStackTrace(); } } this.buffer = null; super.close(); } /** * write a whole byte array as BLOB to the table * @param key the primary key * @param b * @throws IOException */ public synchronized void put(final byte[] key, final byte[] b) throws IOException { assert index.row().primaryKeyLength == key.length : index.row().primaryKeyLength + "!=" + key.length; // we do not write records of length 0 into the BLOB if (b.length == 0) return; // first remove the old entry (removes from buffer and file) this.remove(key); // then look if we can use a free entry if (putToGap(key, b)) return; // if there is not enough space in the buffer, flush all if (this.buffersize + b.length > buffermax) { // this is too big. Flush everything super.shrinkWithGapsAtEnd(); flushBuffer(); if (b.length > buffermax) { this.add(key, b); } else { this.buffer.put(new String(key), b); this.buffersize += b.length; } return; } // add entry to buffer this.buffer.put(new String(key), b); this.buffersize += b.length; } private boolean putToGap(final byte[] key, final byte[] b) throws IOException { assert index.row().primaryKeyLength == key.length : index.row().primaryKeyLength + "!=" + key.length; // we do not write records of length 0 into the BLOB if (b.length == 0) return true; // then look if we can use a free entry if (this.free.size() == 0) return false; // find the largest entry long lseek = -1; int lsize = 0; final int reclen = b.length + index.row().primaryKeyLength; Map.Entry entry; Iterator> i = this.free.entrySet().iterator(); while (i.hasNext()) { entry = i.next(); if (entry.getValue().intValue() == reclen) { // we found an entry that has exactly the size that we need! // we use that entry and stop looking for a larger entry file.seek(entry.getKey()); final int reclenf = file.readInt(); assert reclenf == reclen; file.write(key); file.write(b); // add the entry to the index this.index.putl(key, entry.getKey()); // remove the entry from the free list i.remove(); //System.out.println("*** DEBUG BLOB: replaced-fit record at " + entry.seek + ", reclen=" + reclen + ", key=" + new String(key)); // finished! return true; } // look for the biggest size if (entry.getValue() > lsize) { lseek = entry.getKey(); lsize = entry.getValue(); } } // check if the found entry is large enough if (lsize > reclen + 4) { // split the free entry into two new entries // if would be sufficient if lsize = reclen + 4, but this would mean to create // an empty entry with zero next bytes for BLOB and key, which is not very good for the // data structure in the file // write the new entry file.seek(lseek); file.writeInt(reclen); file.write(key); file.write(b); // add the index to the new entry index.putl(key, lseek); // define the new empty entry final int newfreereclen = lsize - reclen - 4; assert newfreereclen > 0; file.writeInt(newfreereclen); // remove the old free entry this.free.remove(lseek); // add a new free entry this.free.put(lseek + 4 + reclen, newfreereclen); //System.out.println("*** DEBUG BLOB: replaced-split record at " + lseek + ", reclen=" + reclen + ", new reclen=" + newfreereclen + ", key=" + new String(key)); // finished! return true; } // could not insert to gap return false; } /** * remove a BLOB * @param key the primary key * @throws IOException */ public synchronized void remove(final byte[] key) throws IOException { assert index.row().primaryKeyLength == key.length : index.row().primaryKeyLength + "!=" + key.length; // check the buffer byte[] blob = this.buffer.remove(new String(key)); if (blob != null) { this.buffersize -= blob.length; return; } super.remove(key); } /** * iterator over all keys * @param up * @param rotating * @return * @throws IOException */ public synchronized CloneableIterator keys(final boolean up, final boolean rotating) throws IOException { this.flushBuffer(); return super.keys(up, rotating); } /** * iterate over all keys * @param up * @param firstKey * @return * @throws IOException */ public synchronized CloneableIterator keys(final boolean up, final byte[] firstKey) throws IOException { this.flushBuffer(); return super.keys(up, firstKey); } public synchronized long length() throws IOException { return super.length() + this.buffersize; } public static void heaptest() { final File f = new File("/Users/admin/blobtest.heap"); try { //f.delete(); final BLOBHeap heap = new BLOBHeap(f, 12, NaturalOrder.naturalOrder, 1024 * 512); heap.put("aaaaaaaaaaaa".getBytes(), "eins zwei drei".getBytes()); heap.put("aaaaaaaaaaab".getBytes(), "vier fuenf sechs".getBytes()); heap.put("aaaaaaaaaaac".getBytes(), "sieben acht neun".getBytes()); heap.put("aaaaaaaaaaad".getBytes(), "zehn elf zwoelf".getBytes()); // iterate over keys Iterator i = heap.index.keys(true, null); while (i.hasNext()) { System.out.println("key_a: " + new String(i.next())); } i = heap.keys(true, false); while (i.hasNext()) { System.out.println("key_b: " + new String(i.next())); } heap.remove("aaaaaaaaaaab".getBytes()); heap.remove("aaaaaaaaaaac".getBytes()); heap.put("aaaaaaaaaaaX".getBytes(), "WXYZ".getBytes()); heap.close(); } catch (final IOException e) { e.printStackTrace(); } } private static Map map(String a, String b) { HashMap m = new HashMap(); m.put(a, b); return m; } public static void maptest() { final File f = new File("/Users/admin/blobtest.heap"); try { //f.delete(); final MapView heap = new MapView(new BLOBHeap(f, 12, NaturalOrder.naturalOrder, 1024 * 512), 500); heap.put("aaaaaaaaaaaa", map("aaaaaaaaaaaa", "eins zwei drei")); heap.put("aaaaaaaaaaab", map("aaaaaaaaaaab", "vier fuenf sechs")); heap.put("aaaaaaaaaaac", map("aaaaaaaaaaac", "sieben acht neun")); heap.put("aaaaaaaaaaad", map("aaaaaaaaaaad", "zehn elf zwoelf")); heap.remove("aaaaaaaaaaab"); heap.remove("aaaaaaaaaaac"); heap.put("aaaaaaaaaaaX", map("aaaaaaaaaaad", "WXYZ")); heap.close(); } catch (final IOException e) { e.printStackTrace(); } } public static void main(final String[] args) { //heaptest(); maptest(); } }