/** * HandleMap * Copyright 2008 by Michael Peter Christen; mc@yacy.net, Frankfurt a. M., Germany * First released 08.04.2008 at http://yacy.net * * $LastChangedDate$ * $LastChangedRevision$ * $LastChangedBy$ * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public * License as published by the Free Software Foundation; either * version 2.1 of the License, or (at your option) any later version. * * This library is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with this program in the file lgpl21.txt * If not, see . */ package net.yacy.kelondro.index; import java.io.BufferedInputStream; import java.io.BufferedOutputStream; import java.io.File; import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.IOException; import java.io.InputStream; import java.io.OutputStream; import java.util.AbstractMap; import java.util.ArrayList; import java.util.Iterator; import java.util.List; import java.util.Map; import java.util.Map.Entry; import java.util.concurrent.BlockingQueue; import java.util.concurrent.Callable; import java.util.concurrent.ExecutionException; import java.util.concurrent.ExecutorService; import java.util.concurrent.Executors; import java.util.concurrent.Future; import java.util.concurrent.LinkedBlockingQueue; import java.util.zip.GZIPInputStream; import java.util.zip.GZIPOutputStream; import net.yacy.cora.order.ByteOrder; import net.yacy.cora.order.CloneableIterator; import net.yacy.cora.storage.HandleMap; import net.yacy.cora.util.SpaceExceededException; import net.yacy.kelondro.logging.Log; import net.yacy.kelondro.workflow.WorkflowProcessor; public final class RowHandleMap implements HandleMap, Iterable> { private final Row rowdef; private RAMIndexCluster index; /** * initialize a HandleMap * This may store a key and a long value for each key. * The class is used as index for database files * @param keylength * @param objectOrder * @param space */ public RowHandleMap(final int keylength, final ByteOrder objectOrder, final int idxbytes, final int expectedspace, final String name) { this.rowdef = new Row(new Column[]{new Column("key", Column.celltype_binary, Column.encoder_bytes, keylength, "key"), new Column("long c-" + idxbytes + " {b256}")}, objectOrder); this.index = new RAMIndexCluster(name, this.rowdef, spread(expectedspace)); } /** * initialize a HandleMap with the content of a dumped index * @param keylength * @param objectOrder * @param file * @throws IOException * @throws SpaceExceededException */ public RowHandleMap(final int keylength, final ByteOrder objectOrder, final int idxbytes, final File file) throws IOException, SpaceExceededException { this(keylength, objectOrder, idxbytes, (int) (file.length() / (keylength + idxbytes)), file.getAbsolutePath()); // read the index dump and fill the index InputStream is; try { is = new BufferedInputStream(new FileInputStream(file), 1024 * 1024); } catch (final OutOfMemoryError e) { is = new FileInputStream(file); } if (file.getName().endsWith(".gz")) is = new GZIPInputStream(is); final byte[] a = new byte[keylength + idxbytes]; int c; Row.Entry entry; while (true) { c = is.read(a); if (c <= 0) break; entry = this.rowdef.newEntry(a); // may be null if a is not well-formed if (entry != null) this.index.addUnique(entry); } is.close(); is = null; assert this.index.size() == file.length() / (keylength + idxbytes); trim(); } @Override public void trim() { this.index.trim(); } public long mem() { return this.index.mem(); } private static final int spread(final int expectedspace) { return Math.min(WorkflowProcessor.availableCPU, Math.max(WorkflowProcessor.availableCPU, expectedspace / 8000)); } /** * Caclulate a statistic about the possible saving in the data structure when the data structure would be compressed. * A tuple of two values is computed: * @return {, } */ public final int[] saturation() { int valm = this.rowdef.width(1); byte[] lastk = null, thisk; int keym = 0; // will be the maximum length of consecutive equal-beginning byte[] Iterator i = rows(true, null); Row.Entry row; while (i.hasNext()) { row = i.next(); // check length of key if (lastk == null) { lastk = row.bytes(); } else { thisk = row.bytes(); keym = Math.max(keym, eq(lastk, thisk)); lastk = thisk; } // check length of value int valc; // will be the maximum length of leading zeros for (valc = this.rowdef.primaryKeyLength; valc < this.rowdef.objectsize; valc++) { if (lastk[valc] != 0) break; } // valc is the number of leading zeros plus primaryKeyLength valm = Math.min(valm, valc - this.rowdef.primaryKeyLength); // valm is the number of leading zeros after the primary key } // return two values: // keym = the maximum length of consecutive equal-beginning byte[] // this.rowdef.width(1) - valm = the minimum number of leading zeros in the second column return new int[]{keym, this.rowdef.width(1) - valm}; } /** * check length of equal leading bytes * @param a * @param b * @return the length of bytes from both arrays which are equal */ private final static int eq(final byte[] a, final byte[] b) { for (int i = 0; i < a.length; i++) { if (a[i] != b[i]) return i; } return a.length; } /** * write a dump of the index to a file. All entries are written in order * which makes it possible to read them again in a fast way * @param file * @return the number of written entries * @throws IOException */ @Override public final int dump(final File file) throws IOException { // we must use an iterator from the combined index, because we need the entries sorted // otherwise we could just write the byte[] from the in kelondroRowSet which would make // everything much faster, but this is not an option here. final File tmp = new File(file.getParentFile(), file.getName() + ".prt"); final Iterator i = this.index.rows(true, null); OutputStream os; try { os = new BufferedOutputStream(new FileOutputStream(tmp), 4 * 1024 * 1024); } catch (final OutOfMemoryError e) { os = new FileOutputStream(tmp); } if (file.getName().endsWith(".gz")) os = new GZIPOutputStream(os); int c = 0; while (i.hasNext()) { os.write(i.next().bytes()); c++; } os.flush(); os.close(); tmp.renameTo(file); assert file.exists() : file.toString(); assert !tmp.exists() : tmp.toString(); return c; } public final Row row() { return this.index.row(); } @Override public final void clear() { this.index.clear(); } @Override public final byte[] smallestKey() { return this.index.smallestKey(); } @Override public final byte[] largestKey() { return this.index.largestKey(); } @Override public final boolean has(final byte[] key) { assert (key != null); return this.index.has(key); } @Override public final long get(final byte[] key) { assert (key != null); final Row.Entry indexentry = this.index.get(key, false); if (indexentry == null) return -1; return indexentry.getColLong(1); } /** * Adds the key-value pair to the index. * @param key the index key * @param l the value * @return the previous entry of the index * @throws IOException * @throws SpaceExceededException */ @Override public final long put(final byte[] key, final long l) throws SpaceExceededException { assert l >= 0 : "l = " + l; assert (key != null); final Row.Entry newentry = this.rowdef.newEntry(); newentry.setCol(0, key); newentry.setCol(1, l); final Row.Entry oldentry = this.index.replace(newentry); if (oldentry == null) return -1; return oldentry.getColLong(1); } @Override public final void putUnique(final byte[] key, final long l) throws SpaceExceededException { assert l >= 0 : "l = " + l; assert (key != null); final Row.Entry newentry = this.rowdef.newEntry(); newentry.setCol(0, key); newentry.setCol(1, l); this.index.addUnique(newentry); } @Override public final long add(final byte[] key, final long a) throws SpaceExceededException { assert key != null; assert a >= 0; // it does not make sense to add 0. If this occurres, it is a performance issue synchronized (this.index) { final Row.Entry indexentry = this.index.get(key, true); if (indexentry == null) { final Row.Entry newentry = this.rowdef.newEntry(); newentry.setCol(0, key); newentry.setCol(1, a); this.index.addUnique(newentry); return 1; } final long i = indexentry.getColLong(1) + a; indexentry.setCol(1, i); this.index.put(indexentry); return i; } } @Override public final long inc(final byte[] key) throws SpaceExceededException { return add(key, 1); } @Override public final long dec(final byte[] key) throws SpaceExceededException { return add(key, -1); } @Override public final ArrayList removeDoubles() throws SpaceExceededException { final ArrayList report = new ArrayList(); long[] is; int c; long l; final int initialSize = size(); final ArrayList rd = this.index.removeDoubles(); for (final RowCollection rowset: rd) { is = new long[rowset.size()]; c = 0; for (final Row.Entry e: rowset) { l = e.getColLong(1); assert l < initialSize : "l = " + l + ", initialSize = " + initialSize; is[c++] = l; } report.add(is); } return report; } @Override public final ArrayList top(final int count) { final List list0 = this.index.top(count); final ArrayList list = new ArrayList(); for (final Row.Entry entry: list0) { list.add(entry.getPrimaryKeyBytes()); } return list; } @Override public final synchronized long remove(final byte[] key) { assert (key != null); final Row.Entry indexentry; synchronized (this.index) { final boolean exist = this.index.has(key); if (!exist) return -1; final int s = this.index.size(); final long m = this.index.mem(); indexentry = this.index.remove(key); assert (indexentry != null); assert this.index.size() < s : "s = " + s + ", index.size() = " + this.index.size(); assert this.index.mem() <= m : "m = " + m + ", index.mem() = " + this.index.mem(); } if (indexentry == null) return -1; return indexentry.getColLong(1); } @Override public final long removeone() { final Row.Entry indexentry = this.index.removeOne(); if (indexentry == null) return -1; return indexentry.getColLong(1); } @Override public final int size() { return this.index.size(); } @Override public final boolean isEmpty() { return this.index.isEmpty(); } @Override public final CloneableIterator keys(final boolean up, final byte[] firstKey) { return this.index.keys(up, firstKey); } public final CloneableIterator rows(final boolean up, final byte[] firstKey) { return this.index.rows(up, firstKey); } @Override public final void close() { this.index.close(); this.index = null; } /** * this method creates a concurrent thread that can take entries that are used to initialize the map * it should be used when a HandleMap is initialized when a file is read. Concurrency of FileIO and * map creation will speed up the initialization process. * @param keylength * @param objectOrder * @param space * @param bufferSize * @return */ public final static initDataConsumer asynchronusInitializer(final String name, final int keylength, final ByteOrder objectOrder, final int idxbytes, final int expectedspace) { final initDataConsumer initializer = new initDataConsumer(new RowHandleMap(keylength, objectOrder, idxbytes, expectedspace, name)); final ExecutorService service = Executors.newSingleThreadExecutor(); initializer.setResult(service.submit(initializer)); service.shutdown(); return initializer; } private final static class entry { public byte[] key; public long l; public entry(final byte[] key, final long l) { this.key = key; this.l = l; } } protected static final entry poisonEntry = new entry(new byte[0], 0); public final static class initDataConsumer implements Callable { private final BlockingQueue cache; private final RowHandleMap map; private Future result; public initDataConsumer(final RowHandleMap map) { this.map = map; this.cache = new LinkedBlockingQueue(); } protected final void setResult(final Future result) { this.result = result; } /** * hand over another entry that shall be inserted into the HandleMap with an addl method * @param key * @param l */ public final void consume(final byte[] key, final long l) { while (true) try { this.cache.put(new entry(key, l)); break; } catch (final InterruptedException e) { continue; } } /** * to signal the initialization thread that no more entries will be submitted with consumer() * this method must be called. The process will not terminate if this is not called before. */ public final void finish() { while (true) try { this.cache.put(poisonEntry); break; } catch (final InterruptedException e) { continue; } } /** * this must be called after a finish() was called. this method blocks until all entries * had been processed, and the content was sorted. It returns the HandleMap * that the user wanted to initialize * @return * @throws InterruptedException * @throws ExecutionException */ public final RowHandleMap result() throws InterruptedException, ExecutionException { return this.result.get(); } @Override public final RowHandleMap call() throws IOException { try { finishloop: while (true) { entry c; try { while ((c = this.cache.take()) != poisonEntry) { this.map.putUnique(c.key, c.l); } break finishloop; } catch (final InterruptedException e) { continue finishloop; } } } catch (final SpaceExceededException e) { Log.logException(e); } return this.map; } public synchronized void close() { this.map.close(); } } @Override public Iterator> iterator() { final Iterator i = this.index.iterator(); return new Iterator>() { @Override public boolean hasNext() { return i.hasNext(); } @Override public Entry next() { Row.Entry row = i.next(); return new AbstractMap.SimpleEntry(row.getPrimaryKeyBytes(), row.getColLong(1)); } @Override public void remove() { i.remove(); } }; } }