// plasmaWordIndexEntity.java // -------------------------- // part of YACY // (C) by Michael Peter Christen; mc@anomic.de // first published on http://www.anomic.de // Frankfurt, Germany, 2004 // // $LastChangedDate$ // $LastChangedRevision$ // $LastChangedBy$ // // This program is free software; you can redistribute it and/or modify // it under the terms of the GNU General Public License as published by // the Free Software Foundation; either version 2 of the License, or // (at your option) any later version. // // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA // // Using this software in any meaning (reading, learning, copying, compiling, // running) means that you agree that the Author(s) is (are) not responsible // for cost, loss of data or any harm that may be caused directly or indirectly // by usage of this softare or this documentation. The usage of this software // is on your own risk. The installation and usage (starting/running) of this // software may allow other people or application to access your computer and // any attached devices and is highly dependent on the configuration of the // software which must be done by the user of the software; the author(s) is // (are) also not responsible for proper configuration and usage of the // software, even if provoked by documentation provided together with // the software. // // Any changes to this file according to the GPL as documented in the file // gpl.txt aside this file in the shipment you received can be done to the // lines that follows this copyright notice here, but changes must not be // done inside the copyright notive above. A re-distribution must contain // the intact and unchanged copyright notice. // Contributions and changes to the program code must be marked as such. package de.anomic.plasma; import java.io.File; import java.io.IOException; import java.util.Iterator; import de.anomic.index.indexContainer; import de.anomic.index.indexURL; import de.anomic.index.indexURLEntry; import de.anomic.kelondro.kelondroTree; import de.anomic.kelondro.kelondroException; import de.anomic.kelondro.kelondroRow; import de.anomic.server.logging.serverLog; public final class plasmaWordIndexFile { private final String theWordHash; private kelondroTree theIndex; private File theLocation; private boolean delete; public plasmaWordIndexFile(File databaseRoot, String wordHash, boolean deleteIfEmpty) { theWordHash = wordHash; theIndex = indexFile(databaseRoot, wordHash); delete = deleteIfEmpty; } public static boolean removePlasmaIndex(File databaseRoot, String wordHash) { File f = wordHash2path(databaseRoot, wordHash); boolean success = true; if (f.exists()) success = f.delete(); // clean up directory structure f = f.getParentFile(); while ((f.isDirectory()) && (f.list().length == 0)) { if (!(f.delete())) break; f = f.getParentFile(); } return success; } private kelondroTree indexFile(File databaseRoot, String wordHash) { if (wordHash.length() < 12) throw new RuntimeException("word hash wrong: '" + wordHash + "'"); theLocation = wordHash2path(databaseRoot, wordHash); File fp = theLocation.getParentFile(); if (fp != null) fp.mkdirs(); kelondroTree kt; long cacheSize = theLocation.length(); if (cacheSize > 1048576) cacheSize = 1048576; if (theLocation.exists()) try { // open existing index file kt = new kelondroTree(theLocation, cacheSize, 0, kelondroTree.defaultObjectCachePercent); } catch (IOException e) { theLocation.delete(); kt = new kelondroTree(theLocation, cacheSize, 0, kelondroTree.defaultObjectCachePercent, indexURL.urlHashLength, indexURLEntry.encodedStringFormLength(), false); } else { // create new index file kt = new kelondroTree(theLocation, cacheSize, 0, kelondroTree.defaultObjectCachePercent, indexURL.urlHashLength, indexURLEntry.encodedStringFormLength(), false); } return kt; // everyone who get this should close it when finished! } public static File wordHash2path(File databaseRoot, String hash) { // creates a path that constructs hashing on a file system return new File (databaseRoot, "WORDS/" + hash.substring(0,1) + "/" + hash.substring(1,2) + "/" + hash.substring(2,4) + "/" + hash.substring(4,6) + "/" + hash + ".db"); } public String wordHash() { return theWordHash; } public int size() { if (theIndex == null) return 0; int size = theIndex.size(); if ((size == 0) && (delete)) { deleteComplete(); return 0; } else { return size; } } public void close() throws IOException { if (theIndex != null) theIndex.close(); theIndex = null; } public void finalize() { try { close(); } catch (IOException e) {} } public indexURLEntry getEntry(String urlhash) throws IOException { kelondroRow.Entry n = theIndex.get(urlhash.getBytes()); if (n == null) return null; return new indexURLEntry(n.getColString(0, null), n.getColString(1, null)); } public boolean contains(String urlhash) throws IOException { return (theIndex.get(urlhash.getBytes()) != null); } public boolean contains(indexURLEntry entry) throws IOException { return (theIndex.get(entry.urlHash().getBytes()) != null); } public boolean addEntry(indexURLEntry entry) throws IOException { if (entry == null) return false; indexURLEntry oldEntry = getEntry(entry.urlHash()); if ((oldEntry != null) && (entry.isOlder(oldEntry))) { // A more recent Entry is already in this entity return false; } return (theIndex.put(entry.urlHash().getBytes(), entry.toEncodedStringForm().getBytes()) == null); } public int addEntries(indexContainer container) throws IOException { //System.out.println("* adding " + newEntries.size() + " cached word index entries for word " + wordHash); // debug // fetch the index cache if ((container == null) || (container.size() == 0)) return 0; // open file int count = 0; // write from vector if (container != null) { Iterator i = container.entries(); while (i.hasNext()) { if (addEntry((indexURLEntry) i.next())) count++; } } // close and return return count; } public boolean deleteComplete() { if (theIndex == null) return false; try { theIndex.close(); } catch (IOException e) {} // remove file boolean success = theLocation.delete(); // and also the paren directory if that is empty if (success) { File f = theLocation.getParentFile(); while ((f.isDirectory()) && (f.list().length == 0)) { if (!(f.delete())) break; f = f.getParentFile(); } } // reset all values theIndex = null; theLocation = null; return success; } public boolean removeEntry(String urlHash, boolean deleteComplete) throws IOException { // returns true if there was an entry before, false if the key did not exist // if after the removal the file is empty, then the file can be deleted if // the flag deleteComplete is set. if (urlHash == null || theIndex == null) return false; boolean wasEntry = (theIndex.remove(urlHash.getBytes()) != null); if ((theIndex.size() == 0) && (deleteComplete)) deleteComplete(); return wasEntry; } public Iterator elements(boolean up) { // returns an enumeration of plasmaWordIndexEntry objects return new dbenum(up); } public final class dbenum implements Iterator { Iterator i; public dbenum(boolean up) { if (theIndex == null) { i = null; } else try { i = theIndex.rows(up, false, null); } catch (kelondroException e) { e.printStackTrace(); theIndex.file().delete(); i = null; } catch (IOException e) { e.printStackTrace(); theIndex.file().delete(); i = null; } } public boolean hasNext() { return (i != null) && (i.hasNext()); } public Object next() { if (i == null) return null; kelondroRow.Entry n = (kelondroRow.Entry) i.next(); return new indexURLEntry(n.getColString(0, null), n.getColString(1, null)); } public void remove() { throw new UnsupportedOperationException(); } } public String toString() { return "DB:" + theIndex.toString(); } public void merge(plasmaWordIndexFile otherEntity, long time) throws IOException { // this is a merge of another entity to this entity // the merge is interrupted when the given time is over // a time=-1 means: no timeout Iterator i = otherEntity.elements(true); long timeout = (time == -1) ? Long.MAX_VALUE : System.currentTimeMillis() + time; try { while ((i.hasNext()) && (System.currentTimeMillis() < timeout)) { addEntry((indexURLEntry) i.next()); } } catch (kelondroException e) { serverLog.logSevere("PLASMA", "plasmaWordIndexEntity.merge: " + e.getMessage()); } } /* // join methods private static int log2(int x) { int l = 0; while (x > 0) {x = x >> 1; l++;} return l; } public static plasmaWordIndexEntity joinEntities(Set entities, long time) throws IOException { // big problem here: there cannot be a time-out for join, since a time-out will leave the joined set too big. // this will result in a OR behavior of the search instead of an AND behavior long stamp = System.currentTimeMillis(); // order entities by their size TreeMap map = new TreeMap(); plasmaWordIndexEntity singleEntity; Iterator i = entities.iterator(); int count = 0; while (i.hasNext()) { // get next entity: singleEntity = (plasmaWordIndexEntity) i.next(); // check result if ((singleEntity == null) || (singleEntity.size() == 0)) return new plasmaWordIndexEntity(null); // as this is a cunjunction of searches, we have no result if any word is not known // store result in order of result size map.put(new Long(singleEntity.size() * 1000 + count), singleEntity); count++; } // check if there is any result if (map.size() == 0) return new plasmaWordIndexEntity(null); // no result, nothing found // the map now holds the search results in order of number of hits per word // we now must pairwise build up a conjunction of these sets Long k = (Long) map.firstKey(); // the smallest, which means, the one with the least entries plasmaWordIndexEntity searchA, searchB, searchResult = (plasmaWordIndexEntity) map.remove(k); while ((map.size() > 0) && (searchResult.size() > 0)) { // take the first element of map which is a result and combine it with result k = (Long) map.firstKey(); // the next smallest... time -= (System.currentTimeMillis() - stamp); stamp = System.currentTimeMillis(); searchA = searchResult; searchB = (plasmaWordIndexEntity) map.remove(k); searchResult = plasmaWordIndexEntity.joinConstructive(searchA, searchB, 2 * time / (map.size() + 1)); // close the input files/structures if (searchA != searchResult) searchA.close(); if (searchB != searchResult) searchB.close(); } searchA = null; // free resources searchB = null; // free resources // in 'searchResult' is now the combined search result if (searchResult.size() == 0) return new plasmaWordIndexEntity(null); return searchResult; } public static plasmaWordIndexEntity joinConstructive(plasmaWordIndexEntity i1, plasmaWordIndexEntity i2, long time) throws IOException { if ((i1 == null) || (i2 == null)) return null; if ((i1.size() == 0) || (i2.size() == 0)) return new plasmaWordIndexEntity(null); // decide which method to use int high = ((i1.size() > i2.size()) ? i1.size() : i2.size()); int low = ((i1.size() > i2.size()) ? i2.size() : i1.size()); int stepsEnum = 10 * (high + low - 1); int stepsTest = 12 * log2(high) * low; // start most efficient method if (stepsEnum > stepsTest) { if (i1.size() < i2.size()) return joinConstructiveByTest(i1, i2, time); else return joinConstructiveByTest(i2, i1, time); } else { return joinConstructiveByEnumeration(i1, i2, time); } } private static plasmaWordIndexEntity joinConstructiveByTest(plasmaWordIndexEntity small, plasmaWordIndexEntity large, long time) throws IOException { System.out.println("DEBUG: JOIN METHOD BY TEST"); plasmaWordIndexEntity conj = new plasmaWordIndexEntity(null); // start with empty search result Iterator se = small.elements(true); plasmaWordIndexEntry ie0, ie1; long stamp = System.currentTimeMillis(); try { while ((se.hasNext()) && ((System.currentTimeMillis() - stamp) < time)) { ie0 = (plasmaWordIndexEntry) se.next(); ie1 = large.getEntry(ie0.getUrlHash()); if (ie1 != null) { // this is a hit. Calculate word distance: ie0.combineDistance(ie1); conj.addEntry(ie0); } } } catch (kelondroException e) { //serverLog.logSevere("PLASMA", "joinConstructiveByTest: Database corrupt (" + e.getMessage() + "), deleting index"); small.deleteComplete(); return conj; } return conj; } private static plasmaWordIndexEntity joinConstructiveByEnumeration(plasmaWordIndexEntity i1, plasmaWordIndexEntity i2, long time) throws IOException { System.out.println("DEBUG: JOIN METHOD BY ENUMERATION"); plasmaWordIndexEntity conj = new plasmaWordIndexEntity(null); // start with empty search result Iterator e1 = i1.elements(true); Iterator e2 = i2.elements(true); int c; if ((e1.hasNext()) && (e2.hasNext())) { plasmaWordIndexEntry ie1; plasmaWordIndexEntry ie2; try { ie1 = (plasmaWordIndexEntry) e1.next(); } catch (kelondroException e) { //serverLog.logSevere("PLASMA", "joinConstructiveByEnumeration: Database corrupt 1 (" + e.getMessage() + "), deleting index"); i1.deleteComplete(); return conj; } try { ie2 = (plasmaWordIndexEntry) e2.next(); } catch (kelondroException e) { //serverLog.logSevere("PLASMA", "joinConstructiveByEnumeration: Database corrupt 2 (" + e.getMessage() + "), deleting index"); i2.deleteComplete(); return conj; } long stamp = System.currentTimeMillis(); while ((System.currentTimeMillis() - stamp) < time) { c = ie1.getUrlHash().compareTo(ie2.getUrlHash()); if (c < 0) { try { if (e1.hasNext()) ie1 = (plasmaWordIndexEntry) e1.next(); else break; } catch (kelondroException e) { //serverLog.logSevere("PLASMA", "joinConstructiveByEnumeration: Database 1 corrupt (" + e.getMessage() + "), deleting index"); i1.deleteComplete(); break; } } else if (c > 0) { try { if (e2.hasNext()) ie2 = (plasmaWordIndexEntry) e2.next(); else break; } catch (kelondroException e) { //serverLog.logSevere("PLASMA", "joinConstructiveByEnumeration: Database 2 corrupt (" + e.getMessage() + "), deleting index"); i2.deleteComplete(); break; } } else { // we have found the same urls in different searches! ie1.combineDistance(ie2); conj.addEntry(ie1); try { if (e1.hasNext()) ie1 = (plasmaWordIndexEntry) e1.next(); else break; } catch (kelondroException e) { //serverLog.logSevere("PLASMA", "joinConstructiveByEnumeration: Database 1 corrupt (" + e.getMessage() + "), deleting index"); i1.deleteComplete(); break; } try { if (e2.hasNext()) ie2 = (plasmaWordIndexEntry) e2.next(); else break; } catch (kelondroException e) { //serverLog.logSevere("PLASMA", "joinConstructiveByEnumeration: Database 2 corrupt (" + e.getMessage() + "), deleting index"); i2.deleteComplete(); break; } } } } return conj; } */ }