// plasmaWordIndexCache.java // ------------------------- // part of YACY // (C) by Michael Peter Christen; mc@anomic.de // first published on http://www.anomic.de // Frankfurt, Germany, 2005 // // $LastChangedDate$ // $LastChangedRevision$ // $LastChangedBy$ // // This program is free software; you can redistribute it and/or modify // it under the terms of the GNU General Public License as published by // the Free Software Foundation; either version 2 of the License, or // (at your option) any later version. // // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA // // Using this software in any meaning (reading, learning, copying, compiling, // running) means that you agree that the Author(s) is (are) not responsible // for cost, loss of data or any harm that may be caused directly or indirectly // by usage of this softare or this documentation. The usage of this software // is on your own risk. The installation and usage (starting/running) of this // software may allow other people or application to access your computer and // any attached devices and is highly dependent on the configuration of the // software which must be done by the user of the software; the author(s) is // (are) also not responsible for proper configuration and usage of the // software, even if provoked by documentation provided together with // the software. // // Any changes to this file according to the GPL as documented in the file // gpl.txt aside this file in the shipment you received can be done to the // lines that follows this copyright notice here, but changes must not be // done inside the copyright notive above. A re-distribution must contain // the intact and unchanged copyright notice. // Contributions and changes to the program code must be marked as such. package de.anomic.plasma; import java.io.File; import java.io.IOException; import java.util.Iterator; import java.util.Map; import java.util.TreeMap; import de.anomic.kelondro.kelondroArray; import de.anomic.kelondro.kelondroException; import de.anomic.kelondro.kelondroMScoreCluster; import de.anomic.kelondro.kelondroMergeIterator; import de.anomic.kelondro.kelondroNaturalOrder; import de.anomic.kelondro.kelondroRecords; import de.anomic.server.logging.serverLog; import de.anomic.yacy.yacySeedDB; public final class plasmaWordIndexCache implements plasmaWordIndexInterface { // environment constants private static final String indexArrayFileName = "indexDump1.array"; private static final String indexAssortmentClusterPath = "ACLUSTER"; private static final int assortmentCount = 64; private static final int ramCacheLimit = 200; // class variables private final File databaseRoot; private final plasmaWordIndexInterface backend; private final TreeMap cache; private final kelondroMScoreCluster hashScore; private final kelondroMScoreCluster hashDate; private long startTime; private int maxWordsLow, maxWordsHigh; // we have 2 cache limits for different priorities private final serverLog log; private final plasmaWordIndexAssortmentCluster assortmentCluster; private int assortmentBufferSize; //kb private final flush flushThread; // calculated constants private static String maxKey; static { maxKey = ""; for (int i = 0; i < yacySeedDB.commonHashLength; i++) maxKey += 'z'; //minKey = ""; for (int i = 0; i < yacySeedDB.commonHashLength; i++) maxKey += '-'; } public plasmaWordIndexCache(File databaseRoot, plasmaWordIndexInterface backend, int assortmentbufferkb, serverLog log) { // create new assortment cluster path File assortmentClusterPath = new File(databaseRoot, indexAssortmentClusterPath); if (!(assortmentClusterPath.exists())) assortmentClusterPath.mkdirs(); // create flushing thread flushThread = new flush(); // creates a new index cache // the cache has a back-end where indexes that do not fit in the cache are flushed this.databaseRoot = databaseRoot; this.assortmentBufferSize = assortmentbufferkb; this.cache = new TreeMap(); this.hashScore = new kelondroMScoreCluster(); this.hashDate = new kelondroMScoreCluster(); this.startTime = System.currentTimeMillis(); this.maxWordsLow = 8000; this.maxWordsHigh = 10000; this.backend = backend; this.log = log; this.assortmentCluster = new plasmaWordIndexAssortmentCluster(assortmentClusterPath, assortmentCount, assortmentBufferSize, log); // read in dump of last session try { restore(); } catch (IOException e){ log.logSevere("unable to restore cache dump: " + e.getMessage(), e); } // start permanent flushing flushThread.start(); } private void dump(int waitingSeconds) throws IOException { log.logConfig("creating dump for index cache, " + cache.size() + " words (and much more urls)"); File indexDumpFile = new File(databaseRoot, indexArrayFileName); if (indexDumpFile.exists()) indexDumpFile.delete(); kelondroArray dumpArray = null; dumpArray = new kelondroArray(indexDumpFile, plasmaWordIndexAssortment.bufferStructureBasis, 0, false); long startTime = System.currentTimeMillis(); long messageTime = System.currentTimeMillis() + 5000; long wordsPerSecond = 0, wordcount = 0, urlcount = 0; synchronized (cache) { Iterator i = cache.entrySet().iterator(); Map.Entry entry; String wordHash; plasmaWordIndexEntryContainer container; long updateTime; plasmaWordIndexEntry wordEntry; byte[][] row = new byte[5][]; while (i.hasNext()) { // get entries entry = (Map.Entry) i.next(); wordHash = (String) entry.getKey(); updateTime = getUpdateTime(wordHash); container = (plasmaWordIndexEntryContainer) entry.getValue(); // put entries on stack if (container != null) { Iterator ci = container.entries(); while (ci.hasNext()) { wordEntry = (plasmaWordIndexEntry) ci.next(); row[0] = wordHash.getBytes(); row[1] = kelondroRecords.long2bytes(container.size(), 4); row[2] = kelondroRecords.long2bytes(updateTime, 8); row[3] = wordEntry.getUrlHash().getBytes(); row[4] = wordEntry.toEncodedForm(true).getBytes(); dumpArray.set((int) urlcount++, row); } } wordcount++; i.remove(); // free some mem // write a log if (System.currentTimeMillis() > messageTime) { // System.gc(); // for better statistic wordsPerSecond = wordcount * 1000 / (1 + System.currentTimeMillis() - startTime); log.logInfo("dumping status: " + wordcount + " words done, " + (cache.size() / (wordsPerSecond + 1)) + " seconds remaining, free mem = " + (Runtime.getRuntime().freeMemory() / 1024 / 1024) + "MB"); messageTime = System.currentTimeMillis() + 5000; } } } dumpArray.close(); dumpArray = null; log.logConfig("dumped " + urlcount + " word/URL relations in " + ((System.currentTimeMillis() - startTime) / 1000) + " seconds"); } private long restore() throws IOException { File indexDumpFile = new File(databaseRoot, indexArrayFileName); if (!(indexDumpFile.exists())) return 0; kelondroArray dumpArray = new kelondroArray(indexDumpFile); log.logConfig("restore array dump of index cache, " + dumpArray.size() + " word/URL relations"); long startTime = System.currentTimeMillis(); long messageTime = System.currentTimeMillis() + 5000; long urlCount = 0, urlsPerSecond = 0; try { synchronized (cache) { int i = dumpArray.size(); String wordHash; long creationTime; plasmaWordIndexEntry wordEntry; byte[][] row; Runtime rt = Runtime.getRuntime(); while (i-- > 0) { // get out one entry row = dumpArray.get(i); if ((row[0] == null) || (row[1] == null) || (row[2] == null) || (row[3] == null) || (row[4] == null)) continue; wordHash = new String(row[0], "UTF-8"); creationTime = kelondroRecords.bytes2long(row[2]); wordEntry = new plasmaWordIndexEntry(new String(row[3], "UTF-8"), new String(row[4], "UTF-8")); // store to cache addEntry(wordHash, wordEntry, creationTime); urlCount++; // protect against memory shortage while (rt.freeMemory() < 1000000) {flushFromMem(); java.lang.System.gc();} // write a log if (System.currentTimeMillis() > messageTime) { System.gc(); // for better statistic urlsPerSecond = 1 + urlCount * 1000 / (1 + System.currentTimeMillis() - startTime); log.logInfo("restoring status: " + urlCount + " urls done, " + (i / urlsPerSecond) + " seconds remaining, free mem = " + (Runtime.getRuntime().freeMemory() / 1024 / 1024) + "MB"); messageTime = System.currentTimeMillis() + 5000; } } } dumpArray.close(); log.logConfig("restored " + cache.size() + " words in " + ((System.currentTimeMillis() - startTime) / 1000) + " seconds"); } catch (kelondroException e) { // restore failed log.logSevere("restore of indexCache array dump failed: " + e.getMessage(), e); } finally { if (dumpArray != null) try {dumpArray.close();}catch(Exception e){} } return urlCount; } public void intermission(long pause) { flushThread.intermission(pause); } // cache settings public int maxURLinWordCache() { return hashScore.getScore(hashScore.getMaxObject()); } public int wordCacheRAMSize() { return cache.size(); } public void setMaxWords(int maxWordsLow, int maxWordsHigh) { this.maxWordsLow = maxWordsLow; this.maxWordsHigh = maxWordsHigh; } public int[] assortmentsSizes() { return assortmentCluster.sizes(); } public int[] assortmentsCacheChunkSizeAvg() { return assortmentCluster.cacheChunkSizeAvg(); } public int[] assortmentsCacheFillStatusCml() { return assortmentCluster.cacheFillStatusCml(); } public int size() { return java.lang.Math.max(assortmentCluster.sizeTotal(), java.lang.Math.max(backend.size(), cache.size())); } public Iterator wordHashes(String startWordHash, boolean up) { // here we merge 3 databases into one view: // - the RAM Cache // - the assortmentCluster File Cache // - the backend if (!(up)) throw new RuntimeException("plasmaWordIndexCache.wordHashes can only count up"); return new kelondroMergeIterator( new kelondroMergeIterator( cache.tailMap(startWordHash).keySet().iterator(), assortmentCluster.hashConjunction(startWordHash, true), kelondroNaturalOrder.naturalOrder, true), backend.wordHashes(startWordHash, true), kelondroNaturalOrder.naturalOrder, true); } private final class flush extends Thread { boolean terminate; long intermission; public flush() { terminate = false; intermission = 0; this.setName(this.getClass().getName()); } public void intermission(long pause) { this.intermission = System.currentTimeMillis() + pause; } public void run() { long pausetime; while (!terminate) { if (intermission > 0) { if (this.intermission > System.currentTimeMillis()) { try {sleep(this.intermission - System.currentTimeMillis());} catch (InterruptedException e) {} } this.intermission = 0; } flushFromMem(); pausetime = 1 + java.lang.Math.min(1000, 5 * maxWordsHigh / (cache.size() + 1)); if (cache.size() == 0) pausetime = 2000; try { sleep(pausetime); } catch (InterruptedException e) { } } } public void terminate() { terminate = true; } } private void flushFromMem() { // select appropriate hash // we have 2 different methods to find a good hash: // - the oldest entry in the cache // - the entry with maximum count if (cache.size() == 0) return; try { synchronized (cache) { String hash = (String) hashScore.getMaxObject(); if (hash == null) return; int count = hashScore.getMaxScore(); long time = longTime(hashDate.getScore(hash)); if ((count > ramCacheLimit) || ((count > assortmentCount) && (System.currentTimeMillis() - time > 10000))) { // flush high-score entries flushFromMem(hash); } else { // flush oldest entries hash = (String) hashDate.getMinObject(); flushFromMem(hash); } } } catch (Exception e) { log.logSevere("flushFromMem: " + e.getMessage(), e); } } private int flushFromMem(String key) { // this method flushes indexes out from the ram to the disc. plasmaWordIndexEntryContainer container = null; long time; synchronized (cache) { // get the container container = (plasmaWordIndexEntryContainer) cache.get(key); if (container == null) return 0; // flushing of nonexisting key time = getUpdateTime(key); // remove it from the cache cache.remove(key); hashScore.deleteScore(key); hashDate.deleteScore(key); } // now decide where to flush that container plasmaWordIndexEntryContainer feedback = assortmentCluster.storeTry(key, container); if (feedback == null) { return container.size(); } else { // *** should care about another option here *** return backend.addEntries(feedback, time, true); } } private int intTime(long longTime) { return (int) ((longTime - startTime) / 1000); } private long longTime(int intTime) { return ((long) intTime) * ((long) 1000) + startTime; } private boolean flushFromAssortmentCluster(String key, long maxTime) { // this should only be called if the assortment shall be deleted or returned in an index entity maxTime = 8 * maxTime / 10; // reserve time for later adding to backend plasmaWordIndexEntryContainer container = assortmentCluster.removeFromAll(key, maxTime); if (container == null) { return false; } else { // we have a non-empty entry-container // integrate it to the backend return backend.addEntries(container, container.updated(), true) > 0; } } public plasmaWordIndexEntity getIndex(String wordHash, boolean deleteIfEmpty, long maxTime) { // this possibly creates an index file in the back-end // the index file is opened and returned as entity object long start = System.currentTimeMillis(); synchronized (cache) { flushFromMem(wordHash); if (maxTime < 0) { flushFromAssortmentCluster(wordHash, -1); } else { long remaining = maxTime - (System.currentTimeMillis() - start); if (remaining > 0) flushFromAssortmentCluster(wordHash, remaining); } } long r = maxTime - (System.currentTimeMillis() - start); return backend.getIndex(wordHash, deleteIfEmpty, (r < 0) ? 0 : r); } public long getUpdateTime(String wordHash) { plasmaWordIndexEntryContainer entries = (plasmaWordIndexEntryContainer) cache.get(wordHash); if (entries == null) return 0; return entries.updated(); /* Long time = new Long(longTime(hashDate.getScore(wordHash))); if (time == null) return 0; return time.longValue(); */ } public void deleteIndex(String wordHash) { synchronized (cache) { cache.remove(wordHash); hashScore.deleteScore(wordHash); hashDate.deleteScore(wordHash); } assortmentCluster.removeFromAll(wordHash, -1); backend.deleteIndex(wordHash); } public synchronized int removeEntries(String wordHash, String[] urlHashes, boolean deleteComplete) { flushFromMem(wordHash); flushFromAssortmentCluster(wordHash, -1); int removed = backend.removeEntries(wordHash, urlHashes, deleteComplete); return removed; } public int addEntries(plasmaWordIndexEntryContainer container, long updateTime, boolean highPriority) { // this puts the entries into the cache, not into the assortment directly int added = 0; // check cache space /* if (cache.size() > 0) try { // pause to get space in the cache (while it is flushed) long pausetime; if (highPriority) { if (cache.size() + 1000 >= this.maxWordsHigh) Thread.sleep(java.lang.Math.min(1000, cache.size() - this.maxWordsHigh + 1000)); pausetime = java.lang.Math.min(10, 2 * cache.size() / (maxWordsHigh + 1)); } else { if (cache.size() + 1000 >= this.maxWordsLow) Thread.sleep(java.lang.Math.min(1000, cache.size() - this.maxWordsLow + 1000)); pausetime = java.lang.Math.min(10, 2 * cache.size() / (maxWordsLow + 1)); } // slow down if we reach cache limit Thread.sleep(pausetime); } catch (InterruptedException e) {} */ //serverLog.logDebug("PLASMA INDEXING", "addEntryToIndexMem: cache.size=" + cache.size() + "; hashScore.size=" + hashScore.size()); // put new words into cache String wordHash = container.wordHash(); synchronized (cache) { // put container into cache plasmaWordIndexEntryContainer entries = (plasmaWordIndexEntryContainer) cache.get(wordHash); // null pointer exception? wordhash != null! must be cache==null if (entries == null) entries = new plasmaWordIndexEntryContainer(wordHash); added = entries.add(container); if (added > 0) { cache.put(wordHash, entries); hashScore.addScore(wordHash, added); hashDate.setScore(wordHash, intTime(updateTime)); } entries = null; // force flush (sometimes) if (System.currentTimeMillis() % 7 == 4) flushFromMem(); } return added; } private void addEntry(String wordHash, plasmaWordIndexEntry newEntry, long updateTime) { synchronized (cache) { plasmaWordIndexEntryContainer container = (plasmaWordIndexEntryContainer) cache.get(wordHash); if (container == null) container = new plasmaWordIndexEntryContainer(wordHash); plasmaWordIndexEntry[] entries = new plasmaWordIndexEntry[] { newEntry }; if (container.add(entries, updateTime) > 0) { cache.put(wordHash, container); hashScore.incScore(wordHash); hashDate.setScore(wordHash, intTime(updateTime)); } entries = null; container = null; } } public void close(int waitingSeconds) { // stop permanent flushing flushThread.terminate(); try {flushThread.join(5000);} catch (InterruptedException e) {} // close cluster assortmentCluster.close(); try { dump(waitingSeconds); } catch (IOException e){ log.logSevere("unable to dump cache: " + e.getMessage(), e); } } public Object migrateWords2Assortment(String wordhash) throws IOException { // returns the number of entries that had been added to the assortments // can be negative if some assortments have been moved to the backend File db = plasmaWordIndexEntity.wordHash2path(databaseRoot, wordhash); if (!(db.exists())) return "not available"; plasmaWordIndexEntity entity = null; try { entity = new plasmaWordIndexEntity(databaseRoot, wordhash, true); int size = entity.size(); if (size > assortmentCluster.clusterCapacity) { // this will be too big to integrate it entity.close(); entity = null; return "too big"; } else { // take out all words from the assortment to see if it fits // together with the extracted assortment plasmaWordIndexEntryContainer container = assortmentCluster.removeFromAll(wordhash, -1); if (size + container.size() > assortmentCluster.clusterCapacity) { // this will also be too big to integrate, add to entity entity.addEntries(container); entity.close(); entity = null; return new Integer(-container.size()); } else { // the combined container will fit, read the container try { Iterator entries = entity.elements(true); plasmaWordIndexEntry entry; while (entries.hasNext()) { entry = (plasmaWordIndexEntry) entries.next(); // System.out.println("ENTRY = " + entry.getUrlHash()); container.add(new plasmaWordIndexEntry[]{entry}, System.currentTimeMillis()); } // we have read all elements, now delete the entity entity.deleteComplete(); entity.close(); entity = null; // integrate the container into the assortments; this will work assortmentCluster.storeTry(wordhash, container); return new Integer(size); } catch (kelondroException e) { // database corrupted, we simply give up the database and delete it try {entity.close();} catch (Exception ee) {} entity = null; try {db.delete();} catch (Exception ee) {} return "database corrupted; deleted"; } } } } finally { if (entity != null) try {entity.close();}catch(Exception e){} } } }