// indexContainerHeap.java // (C) 2008 by Michael Peter Christen; mc@yacy.net, Frankfurt a. M., Germany // first published 30.03.2008 on http://yacy.net // // This is a part of YaCy, a peer-to-peer based web search engine // // $LastChangedDate: 2008-03-14 01:16:04 +0100 (Fr, 14 Mrz 2008) $ // $LastChangedRevision: 4558 $ // $LastChangedBy: orbiter $ // // LICENSE // // This program is free software; you can redistribute it and/or modify // it under the terms of the GNU General Public License as published by // the Free Software Foundation; either version 2 of the License, or // (at your option) any later version. // // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA package de.anomic.index; import java.io.BufferedInputStream; import java.io.BufferedOutputStream; import java.io.DataInputStream; import java.io.DataOutputStream; import java.io.File; import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.IOException; import java.io.RandomAccessFile; import java.util.Collections; import java.util.Iterator; import java.util.Map; import java.util.Set; import java.util.SortedMap; import java.util.TreeMap; import de.anomic.kelondro.kelondroByteOrder; import de.anomic.kelondro.kelondroBytesLongMap; import de.anomic.kelondro.kelondroCloneableIterator; import de.anomic.kelondro.kelondroRow; import de.anomic.kelondro.kelondroRowSet; import de.anomic.server.logging.serverLog; public final class indexContainerHeap { private final kelondroRow payloadrow; private final serverLog log; private kelondroBytesLongMap index; SortedMap cache; private File backupFile; private boolean readOnlyMode; // index xor cache is used. If one is not null, then the other must be null /* * An indexContainerHeap is a caching structure for indexContainer objects * A heap can have the following stati: * write: the heap can be extended with more indexContainer entries. * a heap that is open to be written may be dumped to a heap file. * after that, the heap is still accessible, but only in read-status, * which is not reversible. Once a heap is dumped, it can never be extended with new * indexConatiner entries. * A write-heap can also initiated using a restore of a dumped heap. * read: a dumped head can be accessed using a heap index. when the heap is * accessed the first time, all entries are scanned and an index is computed */ /** * opens an existing heap file in undefined mode * after this a initialization should be made to use the heap: * either a read-only or read/write mode inititalization * @param payloadrow * @param log */ public indexContainerHeap(final kelondroRow payloadrow, final serverLog log) { this.payloadrow = payloadrow; this.log = log; this.cache = null; this.index = null; this.backupFile = null; this.readOnlyMode = false; } public void clear() throws IOException { if (index != null) index.clear(); if (cache != null) cache.clear(); initWriteMode(); } /** * initializes the heap in read/write mode without reading of a dump first * another dump reading afterwards is not possible */ public void initWriteMode() { this.cache = Collections.synchronizedSortedMap(new TreeMap(new kelondroByteOrder.StringOrder(payloadrow.getOrdering()))); this.readOnlyMode = false; } /** * restore a heap dump: this is a heap in write mode. There should no heap file * be assigned in initialization; the file name is given here in this method * when the heap is once dumped again, the heap file name may be different * @param heapFile * @throws IOException */ public void initWriteMode(final File heapFile) throws IOException { this.readOnlyMode = false; if (log != null) log.logInfo("restoring dump for rwi heap '" + heapFile.getName() + "'"); final long start = System.currentTimeMillis(); this.cache = Collections.synchronizedSortedMap(new TreeMap(new kelondroByteOrder.StringOrder(payloadrow.getOrdering()))); int urlCount = 0; synchronized (cache) { for (final indexContainer container : new heapFileEntries(heapFile, this.payloadrow)) { if (container == null) break; cache.put(container.getWordHash(), container); urlCount += container.size(); } } if (log != null) log.logInfo("finished rwi heap restore: " + cache.size() + " words, " + urlCount + " word/URL relations in " + ((System.currentTimeMillis() - start) / 1000) + " seconds"); } /** * init a heap file in read-only mode * this initiates a heap index generation which is then be used to access elements of the heap * during the life-time of this object, the file is _not_ open; it is opened each time * the heap is accessed for reading * @param heapFile * @throws IOException */ public void initReadMode(final File heapFile) throws IOException { this.readOnlyMode = true; assert this.cache == null; assert this.index == null; this.backupFile = heapFile; if (!(heapFile.exists())) throw new IOException("file " + heapFile + " does not exist"); if (heapFile.length() >= Integer.MAX_VALUE) throw new IOException("file " + heapFile + " too large, index can only be crated for files less than 2GB"); if (log != null) log.logInfo("creating index for rwi heap '" + heapFile.getName() + "'"); final long start = System.currentTimeMillis(); this.index = new kelondroBytesLongMap(payloadrow.primaryKeyLength, (kelondroByteOrder) payloadrow.getOrdering(), 0); DataInputStream is = null; final long urlCount = 0; String wordHash; final byte[] word = new byte[payloadrow.primaryKeyLength]; long seek = 0, seek0; synchronized (index) { is = new DataInputStream(new BufferedInputStream(new FileInputStream(heapFile), 64*1024)); // don't test available() here because this does not work for files > 2GB loop: while (true) { // remember seek position seek0 = seek; // read word try { is.readFully(word); } catch (final IOException e) { break loop; // terminate loop } wordHash = new String(word); seek += wordHash.length(); // read collection try { seek += kelondroRowSet.skipNextRowSet(is, payloadrow); } catch (final IOException e) { break loop; // terminate loop } index.addl(word, seek0); } } is.close(); if (log != null) log.logInfo("finished rwi heap indexing: " + urlCount + " word/URL relations in " + ((System.currentTimeMillis() - start) / 1000) + " seconds"); } public void dump(final File heapFile) throws IOException { assert this.cache != null; if (log != null) log.logInfo("creating rwi heap dump '" + heapFile.getName() + "', " + cache.size() + " rwi's"); if (heapFile.exists()) heapFile.delete(); final DataOutputStream os = new DataOutputStream(new BufferedOutputStream(new FileOutputStream(heapFile), 64 * 1024)); final long startTime = System.currentTimeMillis(); long wordcount = 0, urlcount = 0; String wordHash; indexContainer container; // write wCache synchronized (cache) { for (final Map.Entry entry: cache.entrySet()) { // get entries wordHash = entry.getKey(); container = entry.getValue(); // put entries on heap if (container != null) { os.write(wordHash.getBytes()); if (wordHash.length() < payloadrow.primaryKeyLength) { for (int i = 0; i < payloadrow.primaryKeyLength - wordHash.length(); i++) os.write(0); } os.write(container.exportCollection()); urlcount += container.size(); } wordcount++; } } os.flush(); os.close(); if (log != null) log.logInfo("finished rwi heap dump: " + wordcount + " words, " + urlcount + " word/URL relations in " + ((System.currentTimeMillis() - startTime) / 1000) + " seconds"); // finally delete the internal cache to switch handling to read-only mode this.cache = null; // if the cache will be used in read-only mode afterwards, it must be initiated with initReadMode(file); } public int size() { return (this.cache == null) ? 0 : this.cache.size(); } /** * static iterator of heap files: is used to import heap dumps into a write-enabled index heap */ public static class heapFileEntries implements Iterator, Iterable { DataInputStream is; byte[] word; kelondroRow payloadrow; indexContainer nextContainer; public heapFileEntries(final File heapFile, final kelondroRow payloadrow) throws IOException { if (!(heapFile.exists())) throw new IOException("file " + heapFile + " does not exist"); is = new DataInputStream(new BufferedInputStream(new FileInputStream(heapFile), 64*1024)); word = new byte[payloadrow.primaryKeyLength]; this.payloadrow = payloadrow; this.nextContainer = next0(); } public boolean hasNext() { return this.nextContainer != null; } private indexContainer next0() { try { is.readFully(word); return new indexContainer(new String(word), kelondroRowSet.importRowSet(is, payloadrow)); } catch (final IOException e) { return null; } } public indexContainer next() { final indexContainer n = this.nextContainer; this.nextContainer = next0(); return n; } public void remove() { throw new UnsupportedOperationException("heap dumps are read-only"); } public Iterator iterator() { return this; } public void close() { if (is != null) try { is.close(); } catch (final IOException e) {} is = null; } public void finalize() { this.close(); } } /** * return an iterator object that creates top-level-clones of the indexContainers * in the cache, so that manipulations of the iterated objects do not change * objects in the cache. */ public synchronized kelondroCloneableIterator wordContainers(final String startWordHash, final boolean rot) { return new heapCacheIterator(startWordHash, rot); } /** * cache iterator: iterates objects within the heap cache. This can only be used * for write-enabled heaps, read-only heaps do not have a heap cache */ public class heapCacheIterator implements kelondroCloneableIterator, Iterable { // this class exists, because the wCache cannot be iterated with rotation // and because every indexContainer Object that is iterated must be returned as top-level-clone // so this class simulates wCache.tailMap(startWordHash).values().iterator() // plus the mentioned features private final boolean rot; private Iterator iterator; public heapCacheIterator(final String startWordHash, final boolean rot) { this.rot = rot; this.iterator = (startWordHash == null) ? cache.values().iterator() : cache.tailMap(startWordHash).values().iterator(); // The collection's iterator will return the values in the order that their corresponding keys appear in the tree. } public heapCacheIterator clone(final Object secondWordHash) { return new heapCacheIterator((String) secondWordHash, rot); } public boolean hasNext() { if (rot) return true; return iterator.hasNext(); } public indexContainer next() { if (iterator.hasNext()) { return (iterator.next()).topLevelClone(); } // rotation iteration if (!rot) { return null; } iterator = cache.values().iterator(); return (iterator.next()).topLevelClone(); } public void remove() { iterator.remove(); } public Iterator iterator() { return this; } } /** * test if a given key is in the heap * this works with heaps in write- and read-mode * @param key * @return true, if the key is used in the heap; false othervise */ public boolean has(final String key) { if (this.readOnlyMode) { assert index != null; assert index.row().primaryKeyLength == key.length(); // check if the index contains the key try { return index.getl(key.getBytes()) >= 0; } catch (final IOException e) { e.printStackTrace(); return false; } } return this.cache.containsKey(key); } /** * get a indexContainer from a heap * @param key * @return the indexContainer if one exist, null otherwise */ public indexContainer get(final String key) { if (this.readOnlyMode) try { assert index != null; assert index.row().primaryKeyLength == key.length(); // check if the index contains the key final long pos = index.getl(key.getBytes()); if (pos < 0) return null; // access the file and read the container final RandomAccessFile raf = new RandomAccessFile(backupFile, "r"); final byte[] word = new byte[index.row().primaryKeyLength]; raf.seek(pos); raf.read(word); assert key.equals(new String(word)); // read collection final indexContainer container = new indexContainer(key, kelondroRowSet.importRowSet(raf, payloadrow)); raf.close(); return container; } catch (final IOException e) { log.logSevere("error accessing entry in heap file " + this.backupFile + ": " + e.getMessage()); return null; } return this.cache.get(key); } /** * delete a indexContainer from the heap cache. This can only be used for write-enabled heaps * @param wordHash * @return the indexContainer if the cache contained the container, null othervise */ public synchronized indexContainer delete(final String wordHash) { // returns the index that had been deleted assert this.cache != null; assert !this.readOnlyMode; return cache.remove(wordHash); } public synchronized boolean removeReference(final String wordHash, final String urlHash) { assert this.cache != null; assert !this.readOnlyMode; final indexContainer c = cache.get(wordHash); if ((c != null) && (c.remove(urlHash) != null)) { // removal successful if (c.size() == 0) { delete(wordHash); } else { cache.put(wordHash, c); } return true; } return false; } public synchronized int removeReferences(final String wordHash, final Set urlHashes) { assert this.cache != null; assert !this.readOnlyMode; if (urlHashes.size() == 0) return 0; final indexContainer c = cache.get(wordHash); int count; if ((c != null) && ((count = c.removeEntries(urlHashes)) > 0)) { // removal successful if (c.size() == 0) { delete(wordHash); } else { cache.put(wordHash, c); } return count; } return 0; } public synchronized int add(final indexContainer container) { // this puts the entries into the cache int added = 0; if ((container == null) || (container.size() == 0)) return 0; assert this.cache != null; assert !this.readOnlyMode; // put new words into cache final String wordHash = container.getWordHash(); indexContainer entries = cache.get(wordHash); // null pointer exception? wordhash != null! must be cache==null if (entries == null) { entries = container.topLevelClone(); added = entries.size(); } else { added = entries.putAllRecent(container); } if (added > 0) { cache.put(wordHash, entries); } entries = null; return added; } public synchronized void addEntry(final String wordHash, final indexRWIRowEntry newEntry) { assert this.cache != null; assert !this.readOnlyMode; indexContainer container = cache.get(wordHash); if (container == null) container = new indexContainer(wordHash, this.payloadrow, 1); container.put(newEntry); cache.put(wordHash, container); } }